Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_A22
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    28   1.5  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    26   6.1  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   8.1  

>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 98  RCFS*PRAFSSRACLTSVMSDKPTTKPICEQAFGNSGPCFAYI-KLYSYNQKTKKCEEFI 274
           RC + P +F  R+C TS  +   T+    +Q   ++G    ++  L++  +  + C+   
Sbjct: 371 RCANHPPSFDERSCFTSKQNPDTTSDRCRQQESKDNGNRTVFLGNLHTKTKGHEICDLIR 430

Query: 275 YGGCQ 289
           +GG Q
Sbjct: 431 HGGLQ 435


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 437 PIYIFNSFYTKLHRFIHQLEKRACVNSKVSVT 342
           P+ I NS  TK+H+F+  L ++      ++VT
Sbjct: 376 PVEISNSNVTKIHKFLDTLGRQVFTYEALNVT 407


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 656 TCLLQLIMVTNKAIASXISQIKHFFH 579
           +CL+ L   TN  I   +   KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,860
Number of Sequences: 5004
Number of extensions: 41252
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)