Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_A15
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   101   2e-22
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   100   2e-22

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  101 bits (241), Expect = 2e-22
 Identities = 53/132 (40%), Positives = 68/132 (51%)
 Frame = +1

Query: 202 VXVXXVXXXXXVKXVAAXLKKTGXVXVPXXXXLVKXARFKXLAPYXPXWFYVRCAAXLRH 381
           V V  V     +   AA LK++G +  P    +VK    K LAPY P W+YVR AA  RH
Sbjct: 4   VSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63

Query: 382 IYXRSPVGVXXVXXXFGGRXRXGVTPSXFCRSSGSXARXALQSLXALXLVEXVQXGGRXL 561
           IY R  VGV  +   +GG    G+ PS     SGS  R  +QSL  + ++E    GGR +
Sbjct: 64  IYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRI 123

Query: 562 TTXGXRXLDXIA 597
           +  G R LD IA
Sbjct: 124 SQQGQRDLDRIA 135


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  100 bits (240), Expect = 2e-22
 Identities = 53/132 (40%), Positives = 68/132 (51%)
 Frame = +1

Query: 202 VXVXXVXXXXXVKXVAAXLKKTGXVXVPXXXXLVKXARFKXLAPYXPXWFYVRCAAXLRH 381
           V V  V     +   AA LK++G +  P    +VK    K LAPY P W+YVR AA  RH
Sbjct: 4   VSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63

Query: 382 IYXRSPVGVXXVXXXFGGRXRXGVTPSXFCRSSGSXARXALQSLXALXLVEXVQXGGRXL 561
           IY R  VGV  +   +GG    G+ PS     SGS  R  +QSL  + ++E    GGR +
Sbjct: 64  IYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRI 123

Query: 562 TTXGXRXLDXIA 597
           +  G R LD IA
Sbjct: 124 SQQGQRDLDRIA 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,074,407
Number of Sequences: 5004
Number of extensions: 7272
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)