Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_A15
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    97   1e-20
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    97   1e-20

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 56/144 (38%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
 Frame = +1

Query: 196 RSVXVXXVXXXXXVKXVAAXLKKTGXVXVPXXXXLVKXARFKXLAPYXPXWFYVRCAAXL 375
           R+  +  V      K +A  LKK+G V VP    LVK    K LAP  P WFY R A+  
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 376 RHIYXRSPVGVXXVXXXFGGRXRXGVTPSXFCRSSGSXARXALQSLXALXLVEXVQXG-G 552
           RH+Y R P G+      +GG  R GV P+ F  S+G+  R A+Q L  +  VE    G G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 553 RXLTTXGXRXLDXIAAQVRLXAXQ 624
           R L+  G + LD IA  +R    Q
Sbjct: 122 RILSKQGRKDLDRIATSLRSSGQQ 145


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 56/144 (38%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
 Frame = +1

Query: 196 RSVXVXXVXXXXXVKXVAAXLKKTGXVXVPXXXXLVKXARFKXLAPYXPXWFYVRCAAXL 375
           R+  +  V      K +A  LKK+G V VP    LVK    K LAP  P WFY R A+  
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 376 RHIYXRSPVGVXXVXXXFGGRXRXGVTPSXFCRSSGSXARXALQSLXALXLVEXVQXG-G 552
           RH+Y R P G+      +GG  R GV P+ F  S+G+  R A+Q L  +  VE    G G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 553 RXLTTXGXRXLDXIAAQVRLXAXQ 624
           R L+  G + LD IA  +R    Q
Sbjct: 122 RILSKQGRKDLDRIATSLRSSGQQ 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,602,013
Number of Sequences: 27780
Number of extensions: 51333
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)