Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_A12
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 40 4e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 37 0.005
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 36 0.006
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.019
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.057
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.5
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 8.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 8.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 40.3 bits (90), Expect = 4e-04
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Frame = +2
Query: 740 PPXXXPPLRXXPXPAP---PPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPPX 910
PP P + P PAP PP K +PP P P PP P PP
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 911 PXP 919
P P
Sbjct: 1162 PKP 1164
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Frame = +2
Query: 740 PPXXXPPLRXXPXPAP----PPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPP 907
PP P + P PAP PP K PP P P PP P PP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Query: 908 XPXP 919
P P
Sbjct: 1219 VPTP 1222
Score = 37.1 bits (82), Expect = 0.004
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Frame = +2
Query: 740 PPXXXPPLRXXPXPAP---PPXQKTXXPSPPXGXXXAPXPKTX-PXXXXPPXPXXXPPPP 907
PP P + P PAP PP K +PP + P P PP P PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 908 XPXP 919
P P
Sbjct: 1200 VPKP 1203
Score = 35.1 bits (77), Expect = 0.014
Identities = 19/57 (33%), Positives = 20/57 (35%)
Frame = +2
Query: 743 PXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPPXP 913
P P P P PPP + P P G P P T P P PP P P
Sbjct: 1179 PPVPKPAAGVP-PVPPPSEAPPVPKPSVGVPPVPPPSTAP--PVPTPSAGLPPVPVP 1232
Score = 34.7 bits (76), Expect = 0.019
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = +2
Query: 743 PXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPPXPXP 919
P PP+ P A PP K PP P P PP P PP P P
Sbjct: 1088 PSGIPPV-PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 32.7 bits (71), Expect = 0.075
Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +2
Query: 740 PPXXXPPLRXXPXPAPPPXQKTXXPSPPX---GXXXAPXPKTXPXXXXPPXPXXXPPPPX 910
P PP+ P APP T P P G AP P P P P PP
Sbjct: 1027 PSADAPPI-PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
Query: 911 PXP 919
P P
Sbjct: 1086 PAP 1088
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = +2
Query: 743 PXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPPXPXP 919
P P P APP + P P AP P P PP P PP P P
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAP-PVPKPSVAVPPVPAPSGAPPVPKP 1126
Score = 30.3 bits (65), Expect = 0.40
Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Frame = +2
Query: 740 PPXXXPPLRXXPXPAP---PPXQKTXXPSPPXGXXX--APXPKTXPXXXXPPXPXXXPP- 901
PP P + P P P PP K +PP P PK P PP P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK--PSVAAPPVPAPSSGI 1178
Query: 902 PPXPXP 919
PP P P
Sbjct: 1179 PPVPKP 1184
Score = 29.9 bits (64), Expect = 0.53
Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Frame = +2
Query: 743 PXXXPPLRXXPXPAPPPXQKTXXPS--PPXGXXXAPXPKTXPXXXXPPXPXXXPPPPXPX 916
P PP+ P P + PS PP + P PP P PP P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
Query: 917 P 919
P
Sbjct: 1097 P 1097
Score = 29.9 bits (64), Expect = 0.53
Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Frame = +2
Query: 743 PXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXP-PPPXPXP 919
P PP+ APP + P P AP P P PP P PP P P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP-PVPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 29.5 bits (63), Expect = 0.70
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Frame = +2
Query: 743 PXXXPPLRXXPXPAP---PPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXX-PPPPX 910
P P P PAP PP K +PP P PP P PP
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 911 PXP 919
P P
Sbjct: 1134 PVP 1136
Score = 29.1 bits (62), Expect = 0.93
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = +2
Query: 743 PXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXP-XXXPPPPXPXP 919
P PP+ P A PP PP A P P PP P PP P P
Sbjct: 1155 PSGAPPV-PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +2
Query: 773 PXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPPXP 913
P PP K +PP A P PP P PP P
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVP 1053
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Frame = +1
Query: 742 PXXXPPPAAXPXPXP----PPLXE---NXXPXPPXGXXXXPXPXNPXXXXXXPPPXXXXP 900
P P AA P P P PP+ + P PP P P PPP P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP-PVPKPSVGVPPVPPPSTAPP 1218
Query: 901 PPTAXA 918
PT A
Sbjct: 1219 VPTPSA 1224
Score = 26.2 bits (55), Expect = 6.5
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = +2
Query: 743 PXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXP-PXPXXXPPP-PXP 913
P PP+ APP + P P AP P P P P P PP P P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAP-PVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/58 (25%), Positives = 16/58 (27%)
Frame = +2
Query: 740 PPXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPPXP 913
PP P P P + PS P P P P PP P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.7 bits (81), Expect = 0.005
Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = +2
Query: 740 PPXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXP-PPPXPX 916
PP P L P+ P P PP P P P PP P P PPP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP--AAPPLPPAAPAPPPAPA 481
Query: 917 P 919
P
Sbjct: 482 P 482
Score = 29.1 bits (62), Expect = 0.93
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = +2
Query: 740 PPXXXPPLRXXPXPAPP-PXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPP 907
PP P L APP P P P G AP P PP P P P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP-PLPPAAPAPPPAPAPAPAAP 487
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Frame = +1
Query: 739 SPXXXPP--PAAXPXPXPPPLXENXX---PXPPXGXXXXPXPXNPXXXXXXPPPXXXXPP 903
+P PP P + P PP L P PP P P PP PP
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Query: 904 PTAXA 918
A A
Sbjct: 479 APAPA 483
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +2
Query: 740 PPXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPP 901
PP P + PA PP S P P P + P P P PP
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTP----PVPTPPSLPPSAPPSLPPSAPP 437
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = +1
Query: 700 PTPXRXHXXXQXXSPXXXPPPAAXPXPXPPPLXENXXPXPPXGXXXXPXPXNPXXXXXXP 879
PTP P PP P PPL + PP P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP--PLPPAAPA 475
Query: 880 PPXXXXPPPTA 912
PP P P A
Sbjct: 476 PPPAPAPAPAA 486
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = +2
Query: 743 PXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPPXP 913
P PP+R P A PP P PP P P P P P PPPP P
Sbjct: 1686 PVSTPPVR--PQSAAPPQMSAPTPPPPP-MSVPPPPSAPPM---PAGPPSAPPPPLP 1736
Score = 32.7 bits (71), Expect = 0.075
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Frame = +2
Query: 740 PPXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPP-PXP 913
P PP P P PPP PS P P P P PP P P P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAP------PMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = +1
Query: 730 QXXSPXXXPPPAAXPXP---XPPPLXENXXPXPPXGXXXXPXPXNP 858
Q +P PPP + P P P P P PP P NP
Sbjct: 1701 QMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +2
Query: 779 PAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPPXP 913
PAP P P AP P + P PP P PP P
Sbjct: 1449 PAPMHAVAPVQPKAPGMVTNAPAPSSAP---APPAPVSQLPPAVP 1490
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.019
Identities = 20/60 (33%), Positives = 21/60 (35%)
Frame = +1
Query: 739 SPXXXPPPAAXPXPXPPPLXENXXPXPPXGXXXXPXPXNPXXXXXXPPPXXXXPPPTAXA 918
SP PP P P P P+ P P P P P PPP PPP A
Sbjct: 731 SPPPPPPAVIVPTPAPAPIP--VPPPAPIMGGPPPPPPPPGVAGAGPPPPPP-PPPAVSA 787
Score = 34.3 bits (75), Expect = 0.025
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 812 PSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPPXPXP 919
P PP P P P PP P PPP P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +2
Query: 761 LRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPPXPXP 919
L+ P P P T P+P AP P PP PPP P P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Frame = +1
Query: 700 PTPXRXHXXXQXXSPXXXPPPA----AXPXPXPPPLXENXXPXPP 822
P P +P PPPA P P PPP P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.057
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +2
Query: 743 PXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPP 907
P PP+ P APP P+ P +P PP P PPPP
Sbjct: 154 PASAPPI---PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 32.3 bits (70), Expect = 0.100
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Frame = +2
Query: 779 PAPPPXQKTXXP---SPPXGXXXAPXPKTXPXXXX--PPXPXXXPPPPXP 913
PAPP Q P +PP P P + P PP P PPP P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 31.5 bits (68), Expect = 0.17
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = +2
Query: 755 PPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXPKTXPXXXXPPXPXXXPPPPXPXP 919
PP P P+ PP +PP P P + P P P PP P
Sbjct: 139 PPTSAPPRPSIPPPSPAS--APPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Frame = +1
Query: 757 PPAAXPXPXPPPLXENXXPXPPXGXXXXPXPXN-PXXXXXXPPPXXXXPPPTAXA 918
PP+A P P PP P P + P PP PPP A
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPA 178
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -2
Query: 902 GGXXXXGGGXXXXXXGFXGXGXXXSPKGGXGXXFSXKGGGXGXGXAAGGG 753
GG GGG G G G +GG G +GG G A GG
Sbjct: 23 GGRGGFGGGRGGARGG--GRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -2
Query: 842 GXXXSPKGGXGXXFSXKGG-GXGXGXAAGGG 753
G +GG G +GG G G G A GGG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGG 39
Score = 25.8 bits (54), Expect = 8.6
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = -2
Query: 902 GGXXXXGGGXXXXXXGFXGXGXXXSPKGGXGXXFSXKGGGXGXGXAAGG 756
GG GG GF G G + GG G +GG G G A GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGG-GRGGARGGGRGGA---RGGRGGRGGARGG 56
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/62 (27%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Frame = +2
Query: 743 PXXXPPLRXXPXPAPPPXQKTXXPSPPXGXXXAPXP-----KTXPXXXXPPXPXXXPPPP 907
P P + P PAPPP P P P PP P PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPP 283
Query: 908 XP 913
P
Sbjct: 284 RP 285
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 834 GXPXXXKPXPXXXXPPXPXPXPPP 905
G P P P P P P PPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 916 PGXWGGGXGXGXGGXXXXGXGFXXXGXP 833
PG +GGG G GG G G G P
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 739 SPXXXPPPAAXPXPXPP 789
+P PPPA P P PP
Sbjct: 801 NPFKAPPPAPLPPPAPP 817
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 742 PXXXPPPAAXPXPXPPPLXENXXPXPP 822
P P PA P PPP+ + P P
Sbjct: 732 PTPAPTPAVKHHPPPPPVRSSISPSMP 758
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,035
Number of Sequences: 5004
Number of extensions: 21107
Number of successful extensions: 321
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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