Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_A08
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        30   2.5  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    30   2.5  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    29   4.4  
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    29   4.4  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     29   4.4  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    29   4.4  

>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 353 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 487
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 353 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 487
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 643 NEAIXHLCXVNFXQHXHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 494
           N  I     V    H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 230 NTDDEYYKIGXDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIAL 409
           +T D YY +   + + +    +TN   V+E +K Y     P + ++S       +EAIA 
Sbjct: 62  STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAY 109

Query: 410 FHLFYYAKD 436
           FH +Y  K+
Sbjct: 110 FHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 230 NTDDEYYKIGXDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIAL 409
           +T D YY +   + + +    +TN   V+E +K Y     P + ++S       +EAIA 
Sbjct: 62  STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAY 109

Query: 410 FHLFYYAKD 436
           FH +Y  K+
Sbjct: 110 FHKYYEGKE 118


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 643 NEAIXHLCXVNFXQHXHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 494
           N  I     V    H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 643 NEAIXHLCXVNFXQHXHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 494
           N  I     V    H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,829
Number of Sequences: 27780
Number of extensions: 241925
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)