Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_A07
         (1312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.038
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.27 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.81 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.038
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = +2

Query: 551 PPPPXXXXPRXXXSXXPXXAXPVPLPVXXHXPXXPXPPXXPSGXPPIXXPTXP 709
           PPPP    P    +  P    P P P+    P  P PP      PP   P  P
Sbjct: 734 PPPPAVIVPTPAPAPIPV---PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
 Frame = +2

Query: 500  PXXXXSXRAXPGXRPXLPPPPXXXXPRXXXSXXPXXAXPVPLPVXXHXPXXPXPPXX--- 670
            P    S  A P  +P +  PP            P  A P P+PV    P  P P      
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAP-PVPVPSGAPPVPKPSVAAPP 1151

Query: 671  ---PSGXPPIXXPT 703
               PSG PP+  P+
Sbjct: 1152 VPAPSGAPPVPKPS 1165



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/62 (25%), Positives = 17/62 (27%)
 Frame = +2

Query: 542  PXLPPPPXXXXPRXXXSXXPXXAXPVPLPVXXHXPXXPXPPXXPSGXPPIXXPTXPXAXX 721
            P  PPP             P  A PVP P        P     P   P +  P  P    
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119

Query: 722  LP 727
             P
Sbjct: 1120 AP 1121


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
 Frame = +2

Query: 551  PPPPXXXXP-RXXXSXXPXXAXPVPLPVXXHXPXXPXPPXXPSGXPPIXXPTXP 709
            P  P    P R   +  P  + P P P     P  P  P  P+G P    P  P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/57 (26%), Positives = 17/57 (29%)
 Frame = +2

Query: 530  PGXRPXLPPPPXXXXPRXXXSXXPXXAXPVPLPVXXHXPXXPXPPXXPSGXPPIXXP 700
            P  RP    PP    P            P   P+    P  P PP   S  P +  P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
 Frame = +2

Query: 539 RPXLPPPPXXXXPRXXXSXXPXXAXPVPLPVXXHXPXXPXP--PXXPSGXPPIXXPTXP 709
           RP +PPP     P    S  P     +P P     P    P  P  PS  PP+     P
Sbjct: 146 RPSIPPPSPASAP-PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,294,536
Number of Sequences: 5004
Number of extensions: 9327
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)