Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_A06
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          211   5e-55
11_01_0155 - 1287003-1287452                                          211   5e-55
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539...    37   0.024
11_01_0523 - 4109070-4109984,4110532-4110936                           28   8.6  
02_05_1340 + 35797923-35799881                                         28   8.6  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  211 bits (516), Expect = 5e-55
 Identities = 94/143 (65%), Positives = 118/143 (82%)
 Frame = +1

Query: 94  RXPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 273
           R P   VQ FGRK TA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 274 SMVDIRVTVKGGGXVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 453
             +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVAD
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126

Query: 454 PRRCEPKKFGGPGARARYQKSYR 522
           PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  211 bits (516), Expect = 5e-55
 Identities = 94/143 (65%), Positives = 118/143 (82%)
 Frame = +1

Query: 94  RXPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 273
           R P   VQ FGRK TA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 274 SMVDIRVTVKGGGXVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 453
             +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVAD
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126

Query: 454 PRRCEPKKFGGPGARARYQKSYR 522
           PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149


>07_03_1553 -
           27653473-27653490,27653634-27653673,27653852-27653939,
           27654150-27654230,27654644-27655084,27655692-27656325
          Length = 433

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 25/79 (31%), Positives = 37/79 (46%)
 Frame = +1

Query: 124 GRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 303
           G++  + A  + + G G   VN +  D   P +L ++          +     D+  TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353

Query: 304 GGGXVAQVYAIRQAISKAL 360
           GGG   QV AIR  IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372


>11_01_0523 - 4109070-4109984,4110532-4110936
          Length = 439

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 304 GGGXVAQVYAIRQAISKALIAFY 372
           GGG    V  +++A++KAL+AFY
Sbjct: 48  GGGGFFDVGRLKEALAKALVAFY 70


>02_05_1340 + 35797923-35799881
          Length = 652

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 271 IFPCRAKGLALEVCTAAVW 215
           IFP R +GL + +C+ A W
Sbjct: 560 IFPTRVRGLCIAICSLAFW 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,859,450
Number of Sequences: 37544
Number of extensions: 375277
Number of successful extensions: 942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)