Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_A05
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1115 + 24394944-24396628,24397347-24397386,24397970-243980...    29   5.0  
06_01_1112 - 9157776-9158149,9158248-9161158                           29   6.6  

>08_02_1115 +
           24394944-24396628,24397347-24397386,24397970-24398005,
           24398541-24398574,24398823-24398896
          Length = 622

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 514 PACGILVRTLT-CSAGGVVSKEFGHRRPDVGLQAQITHEW*LPTALSKQLYKC 669
           P+ G LV  L+ C A G ++   G R  ++ L+A +  +  L TAL    +KC
Sbjct: 311 PSSGTLVGVLSACGASGAMAA--GRRLHEIALEAGLELDTALGTALMDMYFKC 361


>06_01_1112 - 9157776-9158149,9158248-9161158
          Length = 1094

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 511 LPACGILVRTLTCSAGGVVSKEFGHRRPDVGLQAQITHE 627
           LP   I+V  +TC   G++ K+  H+    G+   I+H+
Sbjct: 748 LPGIIIVVAAVTCCLYGIIRKKVKHQNISSGMLDMISHQ 786


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,538,237
Number of Sequences: 37544
Number of extensions: 257201
Number of successful extensions: 527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)