Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_A05
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 453 WRSHWPSLDDHRNWY 409
           W +H P+ D   NWY
Sbjct: 661 WLNHSPNYDQVTNWY 675


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +2

Query: 509 SFRRVGSW*EHSLVQPAEWSLRSSVTE 589
           S   V  W     + P EW +R S  E
Sbjct: 567 SINTVAEWEPPRALWPTEWKVRPSTVE 593


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 360 LTGQAYGTRVLGPGGXSTSYGG 425
           +TG AYG   + PG  S  + G
Sbjct: 70  MTGDAYGGLNIRPGQPSRQHAG 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,042
Number of Sequences: 438
Number of extensions: 2529
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)