Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_A04
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    30   0.38 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    29   0.87 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   4.6  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 698  VNEVVVFLVNAILSCGFRINEAMLHLCYVNFLQHFHIHKHFRVY 567
            + + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 920  IEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 822 STRTVNESGSSSSKRSCQYPQXSMSAFVLH 733
           +T TV+ESGSSS+  +  YP  ++S    H
Sbjct: 592 TTSTVSESGSSSASITSTYPSSTLSMTTSH 621


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 302 LVSVVVHIHFDIXXFANFIXXXISV*LAHXL 210
           L+S+  H+HF +  F NF      + L+H L
Sbjct: 140 LLSIKSHVHFHLIPFINFFLLYHQIILSHSL 170


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 621 KMQHGLINPEAAAKYGIHKENDYFVYKAXYSNAVLYNNEEQRLTYF 758
           ++ H L   +   K    K ND F++ +  +N +  N+++ +L YF
Sbjct: 528 RISHTLELQDILVKLSTPKNNDVFIFSSKITNKL--NDDQSKLWYF 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,453
Number of Sequences: 5004
Number of extensions: 51888
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)