Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_A03
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    31   0.84 
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076...    30   1.9  
03_01_0169 + 1385813-1388359                                           29   3.4  
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535...    29   4.5  
01_01_0601 - 4476261-4476728                                           29   4.5  

>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = +2

Query: 458 CLFCACASQSRSILVCLLHRCYPAP 532
           CLFC     SR ILVC L RC  AP
Sbjct: 58  CLFCEANFISRRILVCDLLRCLVAP 82


>12_01_1025 -
           10506144-10506226,10506643-10506699,10507502-10507605,
           10507884-10507937,10508107-10508193,10509027-10509214,
           10509793-10509854,10510084-10510354,10510756-10510834,
           10511715-10511913,10512816-10512960,10513324-10513416,
           10514449-10514736
          Length = 569

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 441 ETFYKSACFARVHLNQGQFLYAF-YIAVIQRPDCHGFRCS 557
           ETF+ +AC  R HL QG+ + A+ Y+   +  DC GF  S
Sbjct: 427 ETFFTTACMGRGHLCQGKLVDAYRYLHKEKDMDC-GFSWS 465


>03_01_0169 + 1385813-1388359
          Length = 848

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 6   SFPSCLXSRAFXPLLPVCXSAGPLPSVLSSG 98
           SFP    +R F P  P   SAG +P+V S+G
Sbjct: 35  SFPGDSPARTFVPDAPFLSSAGRVPAVTSTG 65


>08_02_1339 +
           26252609-26252925,26253025-26253227,26253379-26253536,
           26253802-26253870,26253980-26254461,26254558-26254766,
           26254865-26254901,26254991-26255075,26255186-26255269,
           26255344-26255412,26255520-26255663
          Length = 618

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 597 HIHKHFRXYF-IRSRN--NETRGNQGAG*QRCRRHTRIDL 487
           HI K  R Y  ++S+   NE   N+GAG ++C R TR+ +
Sbjct: 568 HIAKVKRWYLEMKSKKKINEASSNEGAGQKQCYRDTRVSV 607


>01_01_0601 - 4476261-4476728
          Length = 155

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = -2

Query: 211 GRRTEFAFAXQQRRXPXFXT*GGAVXGXHXGARRRQAQPEDKTDGRGPAXKQTGKXGXKA 32
           GR  E   A ++       + G    G H GARRR+ QP +   G     K+ G    + 
Sbjct: 56  GRHRERRRAAREAARGNGGSEGEGGGGAHRGARRRREQPAEGGGGAPQVDKEEGLPAAEG 115

Query: 31  REXRXEGK 8
            +   +G+
Sbjct: 116 GDRAADGE 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,853,602
Number of Sequences: 37544
Number of extensions: 245160
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)