Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_A01
(931 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 23 9.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 23 9.4
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/62 (27%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Frame = +1
Query: 715 PPXPTXXXXPXPXXPPXXPXXXXXXPV---VXXXXPRXGXXXXPPXXXXXXXFXXXXPXP 885
PP P P PP P P+ P G PP F P P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Query: 886 PP 891
PP
Sbjct: 788 PP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/62 (27%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Frame = +1
Query: 715 PPXPTXXXXPXPXXPPXXPXXXXXXPV---VXXXXPRXGXXXXPPXXXXXXXFXXXXPXP 885
PP P P PP P P+ P G PP F P P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Query: 886 PP 891
PP
Sbjct: 788 PP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/62 (27%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Frame = +1
Query: 715 PPXPTXXXXPXPXXPPXXPXXXXXXPV---VXXXXPRXGXXXXPPXXXXXXXFXXXXPXP 885
PP P P PP P P+ P G PP F P P
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
Query: 886 PP 891
PP
Sbjct: 371 PP 372
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.3
Identities = 24/110 (21%), Positives = 29/110 (26%), Gaps = 3/110 (2%)
Frame = +1
Query: 517 GFFSKKKXFXGXKNNXGLPPXXKGGXXXPPPGXPPXGGXXSLFXFXXXXXXXXXXXXXXX 696
GF +++ G + PP PP G PP G S
Sbjct: 214 GFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP 273
Query: 697 XXXXXFPPXPTXXXXPXP---XXPPXXPXXXXXXPVVXXXXPRXGXXXXP 837
PP P P P PP P P P+ G P
Sbjct: 274 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.3
Identities = 24/110 (21%), Positives = 29/110 (26%), Gaps = 3/110 (2%)
Frame = +1
Query: 517 GFFSKKKXFXGXKNNXGLPPXXKGGXXXPPPGXPPXGGXXSLFXFXXXXXXXXXXXXXXX 696
GF +++ G + PP PP G PP G S
Sbjct: 235 GFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP 294
Query: 697 XXXXXFPPXPTXXXXPXP---XXPPXXPXXXXXXPVVXXXXPRXGXXXXP 837
PP P P P PP P P P+ G P
Sbjct: 295 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.3
Identities = 24/110 (21%), Positives = 29/110 (26%), Gaps = 3/110 (2%)
Frame = +1
Query: 517 GFFSKKKXFXGXKNNXGLPPXXKGGXXXPPPGXPPXGGXXSLFXFXXXXXXXXXXXXXXX 696
GF +++ G + PP PP G PP G S
Sbjct: 220 GFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP 279
Query: 697 XXXXXFPPXPTXXXXPXP---XXPPXXPXXXXXXPVVXXXXPRXGXXXXP 837
PP P P P PP P P P+ G P
Sbjct: 280 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 23.4 bits (48), Expect(2) = 9.4
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +1
Query: 712 FPPXPTXXXXPXPXXPPXXPXXXXXXPVVXXXXPRXGXXXXPPXXXXXXXFXXXXPXPPP 891
+PP P P PP P P P G PP + P PPP
Sbjct: 306 WPPPPPPPPGRTPG-PPGMPGMPPPPPPSRFGPPGMGG--MPPPPPPGMRYPGGMPPPPP 362
Score = 23.0 bits (47), Expect(2) = 9.4
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +1
Query: 571 PPXXKGGXXXPPPGXPP 621
PP G PPP PP
Sbjct: 298 PPPPSSGMWPPPPPPPP 314
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 23.4 bits (48), Expect(2) = 9.4
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +1
Query: 712 FPPXPTXXXXPXPXXPPXXPXXXXXXPVVXXXXPRXGXXXXPPXXXXXXXFXXXXPXPPP 891
+PP P P PP P P P G PP + P PPP
Sbjct: 296 WPPPPPPPPGRTPG-PPGMPGMPPPPPPSRFGPPGMGG--MPPPPPPGMRYPGGMPPPPP 352
Score = 23.0 bits (47), Expect(2) = 9.4
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +1
Query: 571 PPXXKGGXXXPPPGXPP 621
PP G PPP PP
Sbjct: 288 PPPPSSGMWPPPPPPPP 304
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,884,155
Number of Sequences: 27780
Number of extensions: 153939
Number of successful extensions: 378
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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