Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P24
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1174 - 26696869-26698191                                         29   6.7  
08_01_0059 - 394001-394708                                             29   6.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.9  

>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +3

Query: 780 PPPPPSXXPXXXXPXXXPXXXPTXXXPXXYXPXXXP 887
           PPPPP+  P    P   P   P    P    P   P
Sbjct: 191 PPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPP 226


>08_01_0059 - 394001-394708
          Length = 235

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +3

Query: 762 PXXXXVPPPPPSXXPXXXXPXXXPXXXPTXXXPXXYXP 875
           P     PPPPP   P    P   P   PT   P  Y P
Sbjct: 11  PPPPATPPPPPRRAPPPPSPPIRPPPPPT---PRPYAP 45


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 285 NESAN---ARGEAVCVLGALPLPRSLTRCAR 368
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,299,121
Number of Sequences: 37544
Number of extensions: 369387
Number of successful extensions: 1806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1689
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)