Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P22
         (934 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           30   3.0  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   4.0  
01_01_1064 + 8393519-8394475                                           29   5.3  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
 Frame = +2

Query: 710 VSPPPKGGITVIPXXQGXTXGXXP--VEPXGXPXXPXXPXXRPXXXXPFFPXGPRPP 874
           +S PP   ++  P          P  + P   P     P  RP    P FP GP PP
Sbjct: 148 ISRPPMPNLSAPPVAYPQVVRPPPGQMPPPMRPPQMPIPFQRPPGVPPAFPGGPPPP 204


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/53 (33%), Positives = 18/53 (33%)
 Frame = +2

Query: 716 PPPKGGITVIPXXQGXTXGXXPVEPXGXPXXPXXPXXRPXXXXPFFPXGPRPP 874
           PPPK      P          P  P G P  P  P   P    P  P GP PP
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKGPP--PPPPAKGPPPPPP--PKGPSPP 365


>01_01_1064 + 8393519-8394475
          Length = 318

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 656 PXPRSXTXCXRSFGXXRXVSPPPKGGITVIPXXQGXTXG 772
           P P S     RS    R  +PPP+   T +P  QG   G
Sbjct: 259 PCPPSLQPARRSTSSERSSAPPPRRRATSLPYRQGLVLG 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,597
Number of Sequences: 37544
Number of extensions: 227218
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)