Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P19
         (924 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    66   2e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    52   3e-05
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    52   3e-05
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    42   0.017
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    42   0.022
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    42   0.029
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.090
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    36   1.9  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 65.7 bits (153), Expect = 2e-09
 Identities = 50/122 (40%), Positives = 54/122 (44%)
 Frame = +3

Query: 324 RGEAVCVLGALPLPRSLTRCARSFGCGERYXLTQRR*YGYPQNXXITXEXTCXXKAXKRP 503
           R   +C  G +PLPRSLTR ARSFGCGERY LT         N       T   +  +  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTDG-----DGNFLEDTRKTLSKEEIR-- 78

Query: 504 XTVKXPRCWRXSIXSAPLTXITKIXXXXXXGXXXXDYXXTXXFPPXXLPXCALLXPXPXX 683
                PR  R SI SAPLT I K       G    DY     F P   P CALL   P  
Sbjct: 79  -----PRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRF-PLVAPSCALLF-LPFG 131

Query: 684 LP 689
           LP
Sbjct: 132 LP 133


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 51.6 bits (118), Expect = 3e-05
 Identities = 29/51 (56%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 300 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYXL-TQRR*YGYPQ 449
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQ 316


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 51.6 bits (118), Expect = 3e-05
 Identities = 23/31 (74%), Positives = 23/31 (74%)
 Frame = -2

Query: 479 TCXFXRYXXILWITVLPPLSEXIPLAAAERP 387
           TC F  Y  ILWITVLPPLSE  PLAA ERP
Sbjct: 26  TCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 42.3 bits (95), Expect = 0.017
 Identities = 29/65 (44%), Positives = 30/65 (46%)
 Frame = +3

Query: 495 KRPXTVKXPRCWRXSIXSAPLTXITKIXXXXXXGXXXXDYXXTXXFPPXXLPXCALLXPX 674
           K+  T    R  R SI SAPLT ITKI      G    DY  T  F P   P CALL   
Sbjct: 3   KKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRF-PLEAPSCALLF-R 60

Query: 675 PXXLP 689
           P  LP
Sbjct: 61  PCRLP 65


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 41.9 bits (94), Expect = 0.022
 Identities = 22/41 (53%), Positives = 26/41 (63%)
 Frame = +1

Query: 226 INKLTTTIAFILCFRFRXEVWEVFSALMNRPTRGERRFAYW 348
           +++LT      L  RF      V +ALMNRPTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 41.5 bits (93), Expect = 0.029
 Identities = 25/52 (48%), Positives = 26/52 (50%)
 Frame = +3

Query: 510 VKXPRCWRXSIXSAPLTXITKIXXXXXXGXXXXDYXXTXXFPPXXLPXCALL 665
           V+ PR  R SI SAPLT ITK       G    DY  T  F P   P CALL
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRF-PLAAPSCALL 94


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.090
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -3

Query: 370 ERGSGRAPNTQTASPRALADSLMQ 299
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 35.5 bits (78), Expect = 1.9
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +3

Query: 102 DPXMXXYIDXFGQTTTRMQ 158
           DP M  YID FGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 441,715,143
Number of Sequences: 1657284
Number of extensions: 5831427
Number of successful extensions: 10717
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10716
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84851082477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)