Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P16
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    31   0.17 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   6.2  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   8.2  

>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 651 YXIQDSIDSFQYKYTSGVSKIYIVFLADSNQSCFDVGEFWYRSYLTVRIDK 499
           Y +  +  +F  +    +SK   V++  + Q CF V  FWYR  + V +DK
Sbjct: 41  YGVASTAKTFLLRTAFDLSKEENVWI--NLQDCFTVAHFWYRILIKVGVDK 89


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 606  SGVSKIYIVFLADSNQSCFDVGEFWYRSYLTVRIDKRFFVRIESREVEAVDGTMEHL 436
            SGV++I++  +  S    F    F   SYL   +D      I +  ++ + G M+ L
Sbjct: 1505 SGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFL 1561


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 338 TRCVPW-VEXXGYIHLITQRNLQRICVSQVTASGKCSIVPSTASTSRLSILTKKRLS 505
           +R +PW V+   Y     +R      +SQ T S   S   S   +S L  L KKR+S
Sbjct: 210 SRTLPWAVDPYRYGDPDPKRTSTSADISQHTVSNDSSNKLSNGRSSSLDSLAKKRMS 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,656
Number of Sequences: 5004
Number of extensions: 43002
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)