Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P16
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 620 STNIPAELAKYISCF--WPTAIN 558
           ST +PA  AK +SC   W  AIN
Sbjct: 317 STMLPAVFAKTVSCIDPWIYAIN 339


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 620 STNIPAELAKYISCF--WPTAIN 558
           ST +PA  AK +SC   W  AIN
Sbjct: 317 STMLPAVFAKTVSCIDPWIYAIN 339


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 20  SRAFFXLCFTCFS 58
           SR  F +CF CF+
Sbjct: 408 SRIVFPVCFVCFN 420


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 20  SRAFFXLCFTCFS 58
           SR  F +CF CF+
Sbjct: 408 SRIVFPVCFVCFN 420


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 20  SRAFFXLCFTCFS 58
           SR  F +CF CF+
Sbjct: 346 SRIVFPVCFVCFN 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,712
Number of Sequences: 438
Number of extensions: 3229
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)