Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_P15
(1312 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 34 0.26
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 33 0.34
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 31 1.8
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 31 2.4
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 2.4
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 5.5
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 7.3
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 7.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 9.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 9.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 9.6
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 33.9 bits (74), Expect = 0.26
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Frame = +2
Query: 578 PXXAPPPXRDGXAGQXR-PXPRGXGXXRQXSSRXPXXPAXGPXPXAXDRXDXPXXASXPX 754
P A PP DG GQ P G + P P P D A P
Sbjct: 203 PGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGPGPAGPPGPAGPAGPDGQSGSGSAGGPG 262
Query: 755 PRGPP 769
P+GPP
Sbjct: 263 PKGPP 267
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 33.5 bits (73), Expect = 0.34
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +2
Query: 587 APPPXRDGXAGQXRPXPR-GXGXXRQXSSRXPXXPAXGPXPXAX---DRXDXPXXASXPX 754
A PP DG G P + G G + P PA P P D P A P
Sbjct: 206 AGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPPGPAGPPGPAGPAGEDAYAQPSPAGTPG 265
Query: 755 PRGPP 769
P GPP
Sbjct: 266 PPGPP 270
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 31.1 bits (67), Expect = 1.8
Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +2
Query: 587 APPPXRDGXAGQXRPXPRGX-GXXRQXSSRXPXXP--AXGPXPXAXDRXDXPXXASXPXP 757
A PP DG G P P G G S+ P P A P P D S P P
Sbjct: 153 AGPPGPDGQPGA--PGPNGQPGAAGTTSTNEPGSPGPAGPPGPAGPAGEDAAAPESPPGP 210
Query: 758 RGPP 769
GPP
Sbjct: 211 PGPP 214
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 30.7 bits (66), Expect = 2.4
Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Frame = +2
Query: 578 PXXAPPPXRDGXAGQXRPX-PRGXGXXRQXSS---RXPXXPAXGPXPXAXDRXDXPXXAS 745
P A P DG AG P P G + + P PA P P P A
Sbjct: 193 PGPAGPAGNDGAAGTPGPDGPAGESTYPEPAGPGPAGPPGPAGPPGPDGASPTAAPGAAG 252
Query: 746 XPXPRGP 766
P P GP
Sbjct: 253 PPGPPGP 259
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.7 bits (66), Expect = 2.4
Identities = 18/65 (27%), Positives = 21/65 (32%)
Frame = +2
Query: 578 PXXAPPPXRDGXAGQXRPXPRGXGXXRQXSSRXPXXPAXGPXPXAXDRXDXPXXASXPXP 757
P PPP + G P P R R P P P + P P P
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSP-PPRRPPMTPPSPQRRPPRTPPSPEP 180
Query: 758 RGPPQ 772
R PP+
Sbjct: 181 RNPPR 185
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.5 bits (63), Expect = 5.5
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = +2
Query: 578 PXXAPPPXRDGXAGQXRPX--PRGXGXXRQXSSRXPXXPAXGPXPXAXDRXDXPXXASXP 751
P PP DG G P G S P PA P P D A+ P
Sbjct: 216 PGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPG-PAGPPGPPGPPGQDGSGGAAQP 274
Query: 752 XPRGPP 769
P GPP
Sbjct: 275 GPPGPP 280
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.1 bits (62), Expect = 7.3
Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Frame = +2
Query: 587 APPPXRDGXAGQXRPX-PRGXGXXRQXSS---RXPXXPAXGPXPXAXDRXDXPXXASXPX 754
A P DG AG P P G + ++ P PA P P P A P
Sbjct: 195 AGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPGPAGPPGPDGASPTAAPGAAGPPG 254
Query: 755 PRGP 766
P GP
Sbjct: 255 PPGP 258
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/47 (29%), Positives = 16/47 (34%)
Frame = +2
Query: 629 PXPRGXGXXRQXSSRXPXXPAXGPXPXAXDRXDXPXXASXPXPRGPP 769
P P G P+ P P D D P + P P GPP
Sbjct: 204 PSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPP 250
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 9.6
Identities = 17/68 (25%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Frame = +2
Query: 578 PXXAPPPXRD---GXAGQXRPXPRGXGXXRQXSSRXPXXPAXGPXPXAXDRXDXPXXASX 748
P PPP +G P P + P P P P P A
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 296
Query: 749 PXPRGPPQ 772
P P PP+
Sbjct: 297 PPPPPPPR 304
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 9.6
Identities = 17/68 (25%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Frame = +2
Query: 578 PXXAPPPXRD---GXAGQXRPXPRGXGXXRQXSSRXPXXPAXGPXPXAXDRXDXPXXASX 748
P PPP +G P P + P P P P P A
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 317
Query: 749 PXPRGPPQ 772
P P PP+
Sbjct: 318 PPPPPPPR 325
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 9.6
Identities = 17/68 (25%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Frame = +2
Query: 578 PXXAPPPXRD---GXAGQXRPXPRGXGXXRQXSSRXPXXPAXGPXPXAXDRXDXPXXASX 748
P PPP +G P P + P P P P P A
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 302
Query: 749 PXPRGPPQ 772
P P PP+
Sbjct: 303 PPPPPPPR 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.313 0.127 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629,971
Number of Sequences: 27780
Number of extensions: 116504
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3663150656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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