Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P14
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    29   0.90 
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    28   2.1  
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    27   4.8  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   6.3  
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    26   8.4  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    26   8.4  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   8.4  

>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 350 DTANXPSVWXELHGXDFSKEEAEGMR 273
           D     + W E+HG D SKEE E  R
Sbjct: 601 DAVEDVAEWLEIHGEDASKEEFEDQR 626


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = -1

Query: 590 FFLDPPTHVRR*RFSHINIYWLGVKPEEALETGSFPFEGTKXRXFPCVTVALRFGLVQVP 411
           FFL+   H    R  H  I++  +   +     S PF  +     P   + L  G V VP
Sbjct: 143 FFLEDTWHYWAHRLFHYGIFYRFI--HKVHHRYSAPFGLSAEYAHPLEIILLGAGTVFVP 200

Query: 410 IFNCYDVNVSMDASXFVWI 354
           +  CY  +     + ++WI
Sbjct: 201 LMWCYFTHDLHLVTMYIWI 219


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 417 LNQAESKXHRNTREXAXFCTLEGKTACFQRFLRFNPKPIYIDM 545
           +N +    H    E + FC +          LRF P+ +YID+
Sbjct: 150 INWSGGLHHAKRGEASGFCYVNDIVLAILNMLRFFPRVLYIDI 192


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 437 LRFGLVQVPIFNCYDVNVSMDASXFV 360
           +RFGL +VP  +CY+  V   A+  V
Sbjct: 4   IRFGLSRVPFAHCYNKRVIFRANYLV 29


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 154 ETDGHEARSKEQATKNETKDXKRRQGGGSXETPESKXEXXAR 29
           E D +   +K+Q   + TKD  R   G        + E  AR
Sbjct: 148 EQDDYNKENKQQKVVDTTKDISRGSNGNEDSAAHQELEECAR 189


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 417 LNQAESKXHRNTREXAXFCTLEGKTACFQRFLRFNPKPIYIDM 545
           +N A    H   RE + FC +          L+++ + +YID+
Sbjct: 130 INWAGGLHHAKKREASGFCYVNDIALAALELLKYHQRVLYIDI 172


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 139 EARSKEQATKNETKDXKRRQGGGSXETPESKXE 41
           EA S E+A +N   +    + GGS   P+SK +
Sbjct: 139 EATSVEKAKENVAHESGTPESGGSTSAPKSKKQ 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,278
Number of Sequences: 5004
Number of extensions: 46880
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)