Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P13
         (890 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   1.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   1.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   5.6  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 767 PPPQXRPSGFPHPPGDTAGPPLXPXTP 847
           PP Q +P+    PPG+TA     P  P
Sbjct: 208 PPIQQQPNQGQQPPGNTAAALPSPLYP 234


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 767 PPPQXRPSGFPHPPGDTAGPPLXPXTP 847
           PP Q +P+    PPG+TA     P  P
Sbjct: 210 PPIQQQPNQGQQPPGNTAAALPSPLYP 236


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 718 GRERKXGPIXKPALPGXWXD 659
           G ++K GPI + A    W D
Sbjct: 29  GAKKKVGPIDQSAAAASWHD 48


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 718 GRERKXGPIXKPALPGXWXD 659
           G ++K GPI + A    W D
Sbjct: 29  GAKKKVGPIDQSAAAASWHD 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,441
Number of Sequences: 336
Number of extensions: 1687
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)