Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P13
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.010
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.22 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.2  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +2

Query: 728 SXPPXXSAXRTGIPP-PQXRPSGFPHPPGDTAGPPLXPXTPXPTPXXPXXRPA 883
           S PP         PP P   P   P P G  A PPL P  P P P  P   PA
Sbjct: 434 SAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP-PPAPAPAPA 485



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +2

Query: 734 PPXXSAXRTGIPPPQXRPSGFPHPPGDTAGPPLXPXTPXPTPXXPXXRPA 883
           PP  +A RT  PP    PS  P  P  +  P   P  P   P  P   P+
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAP-PSLPPSAPPSLPMGAPAAPPLPPS 452


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/45 (42%), Positives = 19/45 (42%)
 Frame = +2

Query: 734  PPXXSAXRTGIPPPQXRPSGFPHPPGDTAGPPLXPXTPXPTPXXP 868
            PP  SA  T  PPP   P   P  P   AGPP  P  P P    P
Sbjct: 1699 PPQMSAP-TPPPPPMSVPPP-PSAPPMPAGPPSAPPPPLPASSAP 1741


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
 Frame = -3

Query: 867 GXXGVGXGVXGXRGGPAVSPGGWGKPEGRXWGGGI-PVRXAE-XXGGXXSXRGGSGXG 700
           G  G   G  G RGG     GG+G   G   GGG    R      GG    RGGS  G
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/62 (35%), Positives = 26/62 (41%)
 Frame = -3

Query: 879 GRCXGXXGVGXGVXGXRGGPAVSPGGWGKPEGRXWGGGIPVRXAEXXGGXXSXRGGSGXG 700
           G   G  G G G  G RGG   S GG+G      +GGG   R     G     RGG   G
Sbjct: 129 GARNGPAGRG-GRGGFRGGRGGSRGGFGGNSRGGFGGG--SRGGFGGGSRGGSRGGFRGG 185

Query: 699 AQ 694
           ++
Sbjct: 186 SR 187


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
 Frame = +2

Query: 737  PXXSAXRTGIPPPQXRPSGFPHPPGDTAGPPL------XPXTPXPTPXXPXXRPA 883
            P   A  +GIPP     +G P  P  +  PP+       P  P P+   P   P+
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 737  PXXSAXRTGIPPPQXRPSG-FPHPPGDTAGPPLXPXTPXPTPXXPXXRPAL 886
            P  S+     PPP   PS   P  P  +  PP+    P P+   P  +P++
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV----PAPSGIPPVPKPSV 1099



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
 Frame = +2

Query: 728  SXPPXXSAXRTGIP--------PPQXRPSGFPH-PPGDTAGPPL------XPXTPXPTPX 862
            S PP   A  + IP        PP   PSG P  P    A PP+       P  P P+  
Sbjct: 1061 SAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGA 1120

Query: 863  XPXXRPAL 886
             P  +P++
Sbjct: 1121 PPVPKPSV 1128


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = -3

Query: 867 GXXGVGXGVXGXRGGPAV---SPGGWGKPEGRXWGGGIPVRXAEXXGGXXSXRGGSG 706
           G  G G G  G  GGP      PGG+G   G  +GGG         GG     GG G
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG-GFGGG-----PGGFGGGPGGHGGPG 272



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = -3

Query: 867 GXXGVGXG-VXGXRGGPAVSPGGWGKPEGRXWGGGIPVRXAEXXGGXXSXRGGSG 706
           G  G G G   G  GGP   PGG+G   G    G          GG     GG G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,520
Number of Sequences: 5004
Number of extensions: 24711
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)