Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P12
         (903 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    45   0.003
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.004
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    38   0.46 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   1.4  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 40/108 (37%), Positives = 45/108 (41%)
 Frame = +3

Query: 420 VCXLGXLPXPRSLTXCXRSFGCGXRYXLXQRR*YGYPXNXGIXXEKTCXQKASKRPGTVK 599
           +C  G +P PRSLT   RSFGCG RY L            G   E T  +  SK      
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE---I 77

Query: 600 RPXCWRFSIGXXPLXXHHKNRXSXQRWRNPDRXIKIPXVSPLXAPSXA 743
           RP   RFSIG  PL    K+           +  K P   PL APS A
Sbjct: 78  RPRRSRFSIGSAPLTSIAKSDAQISGGET-RQDYKDPRRFPLVAPSCA 124


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 23/29 (79%), Positives = 23/29 (79%)
 Frame = +2

Query: 473 VXRLRXAVSAXSKAVIRLSTXSGDXXGKN 559
           V RLR AVSA SKAVIRLST SGD  GKN
Sbjct: 30  VVRLRRAVSAHSKAVIRLSTESGDNAGKN 58


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 37.5 bits (83), Expect = 0.46
 Identities = 23/55 (41%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 384 CINESANXRGXAVCXLGXLPXPRSLTXCXRSFGCGXRYXLXQ-RR*YGYPXNXGI 545
           CI + A  R  AV  L  LP  RS T C RS GCG         R YG P   G+
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGM 320


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 382 SALMNRPTXGXRRFAYW 432
           +ALMNRPT G RRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,535,373
Number of Sequences: 1657284
Number of extensions: 5213613
Number of successful extensions: 7326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7273
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81981722200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)