Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P11
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              28   0.099
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              28   0.099
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   1.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.7  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 28.3 bits (60), Expect = 0.099
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 551 DQEELRQYNEHFLIPRDIFQE*GKFQKXKISECTPIFIES*LLK 682
           + E+ ++YNE  L   +I  E G F++  + E T I+++  ++K
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVIK 98


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 28.3 bits (60), Expect = 0.099
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 551 DQEELRQYNEHFLIPRDIFQE*GKFQKXKISECTPIFIES*LLK 682
           + E+ ++YNE  L   +I  E G F++  + E T I+++  ++K
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVIK 98


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 705 NY*KYHXNLSNYDSMNIGVHSEI-XXFWNFPYSWKISLGIRKCSLYCRN 562
           NY  Y+ N +NY++ N   ++     ++N  Y  +I + +    +YC N
Sbjct: 326 NYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPV-PVPIYCGN 373



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 789 IIMVNNTYEYLHYLN*NGHFKILCIFMQNY*KYHXNLSN 673
           I  ++N Y+Y +Y N N ++        NY  Y+ N +N
Sbjct: 315 ISSLSNNYKYSNYNNYNNNY-------NNYNNYNNNYNN 346


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 259 KYRRPSDSSFENRRRAARSK 318
           KYR  S   F +RR   RSK
Sbjct: 291 KYRETSKERFRDRRERERSK 310


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 241 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQS 348
           QC  C+K     ++   +RR   + +P  C  C ++
Sbjct: 121 QCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERA 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,075
Number of Sequences: 438
Number of extensions: 6175
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)