Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P10
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    46   7e-06
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    31   0.29 
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    29   0.88 

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 21/83 (25%), Positives = 41/83 (49%)
 Frame = +3

Query: 573 WFVMFYGAACVECQRLHAVWESVGAXLQSRINVARIDAXLAGVXTAKRFHVGKLPAFLLF 752
           WF+ FY + C +C  +   W ++   ++ ++NVA I+  ++     K++ +   P FL F
Sbjct: 301 WFIQFYSSECDDCDDVSTAWYAMANRMRGKLNVAHINCAVS-KRACKQYSIQYFPTFLFF 359

Query: 753 RLGKVYRYDLXKNDVXSFVAFAQ 821
           +      Y    N+    V+FA+
Sbjct: 360 KEEAFVEYVGLPNE-GDLVSFAE 381



 Score = 29.1 bits (62), Expect = 0.88
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 573 WFVMFYGAACVECQRLHAVWESV 641
           WF+ +Y  +C  C+RL  +W+++
Sbjct: 45  WFIKYYLPSCGACKRLGPMWDNM 67


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +3

Query: 435 LLYSGEADENEIYGFFEKNQTPAVKELTDKIFEXLTQXXXXXXXXDWFVMFYGAACVECQ 614
           L+Y+G+ D   I  F   +  P + EL    F    Q           ++FY +      
Sbjct: 210 LVYTGDWDPASIADFIGVSSIPLLDELNQMTFGKYQQSGLPLG-----IIFYNST-ESRD 263

Query: 615 RLHAVWESVGAXLQSRINVARIDAXLAGVXTAKRFHV-GKLPAFLLFRLGKVYRY 776
            L+ V++ +    Q  +  A +DA   G   AK+ +V    PAF++  L  + +Y
Sbjct: 264 ELYDVFQPLAKKYQDTLRFAFLDAVRYGA-VAKQMNVESDWPAFVIANLKSMLKY 317


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 40/171 (23%), Positives = 62/171 (36%), Gaps = 11/171 (6%)
 Frame = +3

Query: 273 CXXCKXLEQHVXSLQXXFKXHLNAMXVKX---VNSHLAXLYNPSKXPALIFYRHGVA--L 437
           C  CK L      L   F+ H + +  K     +S +A  Y+ +  P LI++    +  +
Sbjct: 51  CGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPV 110

Query: 438 LYSGEADENEIYGFF-EKNQTPAVK-ELTDKIFEXLT---QXXXXXXXXDWFVMFYGAAC 602
            YS   D + +  F  EK      K  L   + E  +            D  V FY   C
Sbjct: 111 QYSNARDVDSLTQFVSEKTGIKKRKIVLPSNVVELDSLNFDKVVMDDKKDVLVEFYADWC 170

Query: 603 VECQRLHAVWESVGAXLQSRINVARIDAXLAGVXTAKRFH-VGKLPAFLLF 752
             C+RL   +E++G   ++  NV  +           R H V   P    F
Sbjct: 171 GYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFF 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,976
Number of Sequences: 5004
Number of extensions: 35909
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)