Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_P10
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 38 0.011
03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992... 35 0.099
02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920... 30 2.1
05_03_0245 + 10890555-10890962 26 3.0
05_03_0244 + 10857139-10857516 26 3.0
07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609 29 6.5
09_06_0286 + 22040904-22040936,22041342-22041680,22041948-220421... 28 8.6
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 37.9 bits (84), Expect = 0.011
Identities = 26/87 (29%), Positives = 36/87 (41%)
Frame = +3
Query: 579 VMFYGAACVECQRLHAVWESVGAXLQSRINVARIDAXLAGVXTAKRFHVGKLPAFLLFRL 758
V F+ C CQ+L +WE L+ VA +DA A A+ + + P +F
Sbjct: 52 VEFFAPWCGHCQQLTPIWEKAAGVLKGVATVAALDAD-AHKELAQEYGIRGFPTIKVFVP 110
Query: 759 GKVYRYDLXKNDVXSFVAFAQIGIKTL 839
GK DV V FA +K L
Sbjct: 111 GKPPVDYQGARDVKPIVEFALSQVKAL 137
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = +3
Query: 474 GFFEKNQTPAVKELTDKIFEXLTQXXXXXXXXDWFVMFYGAACVECQRLHAVWESVGAXL 653
G EK + A EL + F+ L W V F+ C C++L W+ L
Sbjct: 157 GSSEKTEPSASIELNSQNFDKLVTKSKDL----WIVEFFAPWCGHCKKLAPEWKKAAKNL 212
Query: 654 QSRINVARID 683
+ ++ + +D
Sbjct: 213 KGQVKLGHVD 222
>03_02_0621 -
9923163-9923245,9924163-9924338,9924437-9924495,
9924952-9924984,9925060-9925185
Length = 158
Score = 34.7 bits (76), Expect = 0.099
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 573 WFVMFYGAACVECQRLHAVWESVGAXLQ--SRINVARIDAXLAGVXTAKRFHVGKLPAFL 746
WFV F C C+ L +WE +G ++ I + ++D ++ +K + P F
Sbjct: 61 WFVKFCVPWCKHCKNLGTLWEDLGKVMEGADEIEIGQVDCGVSKPVCSK-VDIHSYPTFK 119
Query: 747 LFRLG-KVYRYDLXKN 791
+F G +V +Y +N
Sbjct: 120 VFYEGEEVAKYKGPRN 135
>02_02_0469 + 10691648-10691692,10691755-10691907,10692043-10692093,
10692162-10692224,10692327-10693031,10693128-10693223,
10693307-10695547
Length = 1117
Score = 30.3 bits (65), Expect = 2.1
Identities = 32/160 (20%), Positives = 59/160 (36%)
Frame = +3
Query: 363 NSHLAXLYNPSKXPALIFYRHGVALLYSGEADENEIYGFFEKNQTPAVKELTDKIFEXLT 542
N HL ++ K A +++R + I F+ N P K+ DK
Sbjct: 820 NQHLQLMWQTRKSWAPVYFREDLYPFIDSVGSNEGINSLFKGNMLP--KDTIDKFIGQFK 877
Query: 543 QXXXXXXXXDWFVMFYGAACVECQRLHAVWESVGAXLQSRINVARIDAXLAGVXTAKRFH 722
+ F A ++ + + E A + +R ++ L + F+
Sbjct: 878 EIQENIAKVHEEDRFQSGADLKYISMQPI-EQHAAHIYTREIFLKVQEELLH---STAFN 933
Query: 723 VGKLPAFLLFRLGKVYRYDLXKNDVXSFVAFAQIGIKTLK 842
V ++ ++RL KV+ Y+ + D F A+ GI K
Sbjct: 934 VQEIQIGTVYRLEKVFNYENPEFDRNYFEVLAEPGINAFK 973
>05_03_0245 + 10890555-10890962
Length = 135
Score = 26.2 bits (55), Expect(2) = 3.0
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Frame = +2
Query: 620 TCCLGKCWSXITEQNKC------CSH*CXFSWCXH 706
+CC G+C +++++ C CS+ C + +C +
Sbjct: 99 SCCGGRCVDLLSDRDNCGSCSNQCSNKCTYGFCDY 133
Score = 22.2 bits (45), Expect(2) = 3.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 611 PKATCCLGKC 640
P ATCC G+C
Sbjct: 68 PGATCCGGRC 77
>05_03_0244 + 10857139-10857516
Length = 125
Score = 26.2 bits (55), Expect(2) = 3.0
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Frame = +2
Query: 620 TCCLGKCWSXITEQNKC------CSH*CXFSWCXH 706
+CC G+C +++++ C CS+ C + +C +
Sbjct: 90 SCCGGRCVDLLSDRDNCGSCSNQCSNKCTYGFCDY 124
Score = 22.2 bits (45), Expect(2) = 3.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 611 PKATCCLGKC 640
P ATCC G+C
Sbjct: 59 PGATCCGGRC 68
>07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609
Length = 475
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Frame = +3
Query: 573 WFVMFYGAACVECQRLHAVWESV-----GAXLQSRINVARIDAXLAGVXTAKRFHVGKLP 737
W V+ Y C CQ + A + + GA ++ R D + + P
Sbjct: 384 WLVVLYAPWCPFCQAMEASYLELAERLGGAGGGVKVGKFRADGE-QKAFAQQELQLQSFP 442
Query: 738 AFLLF--RLGKVYRYDLXKNDVXSFVAF 815
LLF R + +Y K DV S +AF
Sbjct: 443 TILLFPSRTARPIKYPSEKRDVDSLLAF 470
>09_06_0286 +
22040904-22040936,22041342-22041680,22041948-22042190,
22042285-22042434,22043659-22044045
Length = 383
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +3
Query: 576 FVMFYGAACVECQRLHAVWESVGAXLQSRINVARIDAXLAGVXTAKRFHVGKLPAFLLFR 755
+++ A+ ++C +L A + + + R+N + L+ V AK++ GK+P+ + F
Sbjct: 308 YLIIENASSLQCLKLDAGYGFDTSGMCKRMNKLDVLHALSAVEVAKKYIEGKVPSSVKFN 367
Query: 756 L 758
+
Sbjct: 368 I 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,529
Number of Sequences: 37544
Number of extensions: 213433
Number of successful extensions: 427
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -