Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P06
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   6.2  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   6.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   8.2  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    26   8.2  

>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 258 KQAVPRLVRNIEYLFGLTLNEKFAQFILSN 169
           +   P+L+ N+  L  L++NEK+  F++ N
Sbjct: 49  RNGAPKLLLNLFSLENLSMNEKYQVFVVLN 78


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 771 LXDVIDSDSWRLWP 812
           L  ++DSD+WR WP
Sbjct: 106 LKHLVDSDTWRRWP 119


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 209 LPSMRSLPNLYCPTCL-G*DIFAIFERKE 126
           LPS  +LPNLY  + L   ++FA ++R+E
Sbjct: 871 LPSFSNLPNLYSSSYLEEWNVFAQYKRRE 899


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +1

Query: 334 QTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEG 513
           QTN ++ + +     K    KIA  T  L K+ +  P+  ++ +L      +++  VPE 
Sbjct: 29  QTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEV 88

Query: 514 FRVHSSK 534
             +   K
Sbjct: 89  SELEKDK 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,256
Number of Sequences: 5004
Number of extensions: 69388
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)