Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P06
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 82   HSSRAPXRIGSSLHSSLRSKIAKMSHPKQVGQY 180
            HS      +G   ++S  S+    S P+Q G+Y
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRY 1787


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +3

Query: 456 YPPPCNWLVLKKESWCTRRLQGSLLQNKRRSLRMTQTTIPNGQRSKS 596
           Y PP  W +LK        +   L  ++     + QT   NG R  S
Sbjct: 219 YQPPFAWKILKAAEEAGFGVSEDLSGDRINGFTVAQTISRNGVRLSS 265


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 811 GHNLQESESMTSXNTMXPSVSTP 743
           GH+  + E M    +M P + TP
Sbjct: 707 GHDSGQDEDMAEDLSMAPDIMTP 729


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,731
Number of Sequences: 438
Number of extensions: 4629
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)