Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P04
         (977 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome s...    39   0.22 
UniRef50_Q8GD27 Cluster: Adhesin FhaB; n=3; cellular organisms|R...    36   2.1  
UniRef50_Q8H9E1 Cluster: Extensin; n=6; Eukaryota|Rep: Extensin ...    34   6.4  

>UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 13 SCAF15000, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 307

 Score = 38.7 bits (86), Expect = 0.22
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
 Frame = -2

Query: 670 FFXPXFFXPXXPXXFFXXXXXP--PXIXXXXPXPPPXXXXXXXIY*XXXPPPPPXXXKXX 497
           FF P FF    P  FF     P  P      P PPP       ++    PPPPP      
Sbjct: 143 FFPPLFFF--FPFSFFPPPFPPSPPLSPPYFPPPPPLPPPPFPLFPLFPPPPPPPPPPPF 200

Query: 496 FPPP 485
            PPP
Sbjct: 201 SPPP 204



 Score = 34.3 bits (75), Expect = 4.8
 Identities = 23/78 (29%), Positives = 25/78 (32%)
 Frame = -2

Query: 670 FFXPXFFXPXXPXXFFXXXXXPPXIXXXXPXPPPXXXXXXXIY*XXXPPPPPXXXKXXFP 491
           FF   FF P  P         PP      P PPP       ++    PPPPP       P
Sbjct: 150 FFPFSFFPPPFPPS---PPLSPPYFPPPPPLPPPPFPLFP-LFPPPPPPPPPPPFSPPPP 205

Query: 490 PPXXFFFFXXXXFXXPSP 437
           P      F    F  P P
Sbjct: 206 PSPPPSLFSPPPFFSPPP 223



 Score = 33.9 bits (74), Expect = 6.4
 Identities = 26/96 (27%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
 Frame = -3

Query: 762 FXFFXXXXXFFXX---PPPXXXXXXXXXPXXXPXFFXXXFXPPXXPXFFFXXXXXPPPXX 592
           F FF     FF     PPP         P   P        PP  P F       PPP  
Sbjct: 141 FIFFPPLFFFFPFSFFPPPFPPSPPLSPPYFPPP---PPLPPPPFPLFPLFPPPPPPPPP 197

Query: 591 XXPLPPPPXXXXXXXFIXXXXXHXPPXXXXKXSPPP 484
             P  PPP                PP       PPP
Sbjct: 198 -PPFSPPPPPSPPPSLFSPPPFFSPPPSFPPLPPPP 232


>UniRef50_Q8GD27 Cluster: Adhesin FhaB; n=3; cellular organisms|Rep:
            Adhesin FhaB - Bordetella avium
          Length = 2621

 Score = 35.5 bits (78), Expect = 2.1
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = -2

Query: 607  PPXIXXXXPXPPPXXXXXXXIY*XXXPPPPPXXXKXXFPPP 485
            PP +    P PPP       +     PPPPP   K   PPP
Sbjct: 2334 PPKVKKVDPPPPPPPPKVKKVDPPPPPPPPPPKVKKVDPPP 2374


>UniRef50_Q8H9E1 Cluster: Extensin; n=6; Eukaryota|Rep: Extensin -
           Solanum tuberosum (Potato)
          Length = 152

 Score = 33.9 bits (74), Expect = 6.4
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
 Frame = -2

Query: 646 PXXPXXFFXXXXXPPXIXXXXPXPP--PXXXXXXXIY*XXXPPPPPXXXKXXFPPPXXF 476
           P  P  ++     PP      P PP          +Y    PPPPP   K   PPP  +
Sbjct: 57  PSPPPPYYYKSPPPPPPVYKSPPPPVYKYKSPPPPVYKYKSPPPPPPVYKYKSPPPPVY 115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,942,592
Number of Sequences: 1657284
Number of extensions: 5163859
Number of successful extensions: 29609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20732
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 91448297248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)