Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_P04
(977 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 31 1.4
12_02_1174 - 26696869-26698191 29 4.3
12_02_1219 + 27096477-27096590,27096704-27097078 29 5.6
12_02_0299 - 17051570-17052474,17053542-17053755 29 5.6
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.6
03_01_0023 + 198414-198968 29 5.6
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.6
07_03_1136 + 24218601-24218734,24218769-24219906 29 7.5
07_01_0753 - 5799733-5799741,5799938-5800642 29 7.5
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 29 7.5
03_05_0292 + 22846273-22846377,22847161-22847823 29 7.5
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 7.5
03_01_0515 - 3864796-3865425 28 9.8
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 31.1 bits (67), Expect = 1.4
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +2
Query: 569 GGGGRGXXXNGGGXXXXXKKXXGXXGGKKXXXKKXGXXXGXXXXXXXXXGGG 724
GGGGRG GGG G GG + G G GGG
Sbjct: 70 GGGGRGYGGGGGGGGYESGGGRGYGGGGRGYESGGGRGPGGGGRGHESGGGG 121
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.5 bits (63), Expect = 4.3
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = -3
Query: 606 PPPXXXXPLPPPPXXXXXXXFIXXXXXHXPPXXXXKXSPPP 484
PPP P PPPP + PP PPP
Sbjct: 153 PPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPP 193
>12_02_1219 + 27096477-27096590,27096704-27097078
Length = 162
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/52 (30%), Positives = 18/52 (34%)
Frame = +2
Query: 569 GGGGRGXXXNGGGXXXXXKKXXGXXGGKKXXXKKXGXXXGXXXXXXXXXGGG 724
GGGG G GGG G GG ++ G G GGG
Sbjct: 91 GGGGGGYGQRGGGGGYGGGGGYGGGGGGGYGQRREGGYGGGGGYGGGRGGGG 142
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.1 bits (62), Expect = 5.6
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = -3
Query: 654 FXP-PXXPXFFFXXXXXPPPXXXXPLPPPPXXXXXXXFIXXXXXHXPPXXXXKXSPPP 484
F P P P F PPP PLPP P H PP PPP
Sbjct: 239 FLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPP----AFPFPHLPPIFSPPSPPPP 292
Score = 28.3 bits (60), Expect = 9.8
Identities = 25/92 (27%), Positives = 25/92 (27%), Gaps = 9/92 (9%)
Frame = -3
Query: 732 FXXPP-PXXXXXXXXXPXXXPXFFXXXFXPPXXPXFFFXXXXXPPPXXXXPL-------- 580
F PP P P P F PP P F F PP PL
Sbjct: 262 FPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPP 321
Query: 579 PPPPXXXXXXXFIXXXXXHXPPXXXXKXSPPP 484
PPPP P SPPP
Sbjct: 322 PPPPPPPPPPPSFPWPFPPLAPLFPPYPSPPP 353
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 583 PXPPPXXXXXXXIY*XXXPPPPPXXXKXXFPPP 485
P PPP + PPPPP PPP
Sbjct: 621 PPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPP 653
>03_01_0023 + 198414-198968
Length = 184
Score = 29.1 bits (62), Expect = 5.6
Identities = 18/62 (29%), Positives = 19/62 (30%)
Frame = +2
Query: 569 GGGGRGXXXNGGGXXXXXKKXXGXXGGKKXXXKKXGXXXGXXXXXXXXXGGGXXKXXXXX 748
GGGG G GGG G GG G G GGG +
Sbjct: 45 GGGGGGGRGGGGGSGGGSGGGGGSGGGGSGGGGSGGGGSGGGGGGGSGGGGGGGRCPIDT 104
Query: 749 LK 754
LK
Sbjct: 105 LK 106
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = -3
Query: 648 PPXXPXFFFXXXXXPPPXXXXPLPPPPXXXXXXXFIXXXXXHXPPXXXXKXSPPP 484
PP P PPP P PPPP PP PPP
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +2
Query: 485 GGGEXXFXXXGGXWXXXXLINXXXXXXXGGGGRGXXXNGGGXXXXXKKXXGXXGG 649
GGG GG L N GGGG G GGG G GG
Sbjct: 268 GGGGTDRNKGGGGGGGGALENAREDGAEGGGGGGGGGGGGGHGAPELGFSGGGGG 322
Score = 28.3 bits (60), Expect = 9.8
Identities = 15/52 (28%), Positives = 18/52 (34%)
Frame = +2
Query: 569 GGGGRGXXXNGGGXXXXXKKXXGXXGGKKXXXKKXGXXXGXXXXXXXXXGGG 724
GGG R GGG ++ G GG + G G GGG
Sbjct: 127 GGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGG 178
>07_01_0753 - 5799733-5799741,5799938-5800642
Length = 237
Score = 28.7 bits (61), Expect = 7.5
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -3
Query: 648 PPXXPXFFFXXXXXPPPXXXXPLPPPP 568
PP P + F PP P PPPP
Sbjct: 28 PPNQPYYAFPAAAYAPPPPPPPPPPPP 54
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 28.7 bits (61), Expect = 7.5
Identities = 17/58 (29%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Frame = -3
Query: 606 PPPXXXXPLPPPPXXXXXXXFIXXXXXH--XPPXXXXKXSPPPLXXXXFXXKXXPXLP 439
PPP P PPPP + PP PPPL P LP
Sbjct: 365 PPPPPPPPPPPPPPAVTQQQDVKTSCGPAVPPPPPPTPPPPPPLLAPKQQSSGGPILP 422
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 28.7 bits (61), Expect = 7.5
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 569 GGGGRGXXXNGGGXXXXXKKXXGXXGGKKXXXKKXGXXXG 688
GGGGRG GGG + G GG + G G
Sbjct: 49 GGGGRGRGGGGGGRGDGARDGGGARGGGGRGARGGGGARG 88
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.7 bits (61), Expect = 7.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -2
Query: 583 PXPPPXXXXXXXIY*XXXPPPPPXXXKXXFPPP 485
P PPP PPPPP K PPP
Sbjct: 355 PPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPP 387
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 9.8
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = -3
Query: 606 PPPXXXXPLPPPPXXXXXXXFIXXXXXHXPPXXXXKXSPPP 484
PPP PL PPP PP SPPP
Sbjct: 61 PPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPP 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,955,492
Number of Sequences: 37544
Number of extensions: 273124
Number of successful extensions: 2834
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2218
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2846681820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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