Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P04
         (977 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical ...    31   0.94 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   5.0  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    29   5.0  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   6.7  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical
           protein W08E12.6 protein.
          Length = 215

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 22/84 (26%), Positives = 24/84 (28%)
 Frame = -3

Query: 735 FFXXPPPXXXXXXXXXPXXXPXFFXXXFXPPXXPXFFFXXXXXPPPXXXXPLPPPPXXXX 556
           FF  PPP         P            PP  P F       PPP    P  PPP    
Sbjct: 19  FFLPPPPCFGIGCNQPPIVIAGPPPCFDCPPPAPIFV----APPPPPCFGPACPPPCFGP 74

Query: 555 XXXFIXXXXXHXPPXXXXKXSPPP 484
               +     + PP       PPP
Sbjct: 75  ACVPLAPIIVNGPPPCFGPACPPP 98


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = -2

Query: 607 PPXIXXXXPXPPPXXXXXXXIY*XXXPPPPPXXXKXXFPPP 485
           PP +    P PPP       +     PPPP        PPP
Sbjct: 310 PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 350


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = -2

Query: 607 PPXIXXXXPXPPPXXXXXXXIY*XXXPPPPPXXXKXXFPPP 485
           PP +    P PPP       +     PPPP        PPP
Sbjct: 320 PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 360


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -2

Query: 583 PXPPPXXXXXXXIY*XXXPPPPPXXXKXXFPPP 485
           P PPP       +     PPPPP       PPP
Sbjct: 68  PPPPPPPPLISILQQAPPPPPPPPPPTLKAPPP 100



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -2

Query: 583 PXPPPXXXXXXXIY*XXXPPPPPXXXKXXFPPP 485
           P PPP             PPPPP   K   PPP
Sbjct: 70  PPPPPPLISILQQAPPPPPPPPPPTLKAPPPPP 102


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = -3

Query: 723 PPPXXXXXXXXXPXXXPXFFXXXFXPPXXPXFFFXXXXXPPPXXXXPLPPPP 568
           PPP         P   P      F PP            PPP    P PPPP
Sbjct: 32  PPPPPMCAPPPLPCPPPPICPPQFCPPPP---MCPPPPPPPPPPMCPPPPPP 80


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
 Frame = +2

Query: 569 GGGGRGXXXNGGGXXXXXKKXXGXXGGKK-XXXKKXGXXXGXXXXXXXXXGGG 724
           GGGG G    GGG         G  GG++    ++ G   G         GGG
Sbjct: 207 GGGGGGDRYGGGGGDRYGGDRYGGGGGRRGSPDRRGGFRSGGGGGGYMRSGGG 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,573,514
Number of Sequences: 27780
Number of extensions: 136876
Number of successful extensions: 875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)