Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P02
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    96   7e-21

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 95.9 bits (228), Expect = 7e-21
 Identities = 60/152 (39%), Positives = 70/152 (46%), Gaps = 1/152 (0%)
 Frame = +1

Query: 397 IVENGAGTG*TVYPPLSSNIAHRGRSVDLXIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 576
           + E G G G TVYPPLSS  +H G ++DL I SL L GISS                   
Sbjct: 124 LTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGL 183

Query: 577 SFDQLPLFV*AVGIXXXXXXXXXXXXXXXXXXXXTDRXLNXSFFDPXGGGDPILYXXLF* 756
           S  Q+PLF  A+ I                    +DR LN SF+ P GGGDP+LY  LF 
Sbjct: 184 SLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFW 243

Query: 757 FFGNPEV-IF*FXRIWYNXHIIYKKEEKRNFG 849
           FFG+PEV I          HII     K  FG
Sbjct: 244 FFGHPEVYILIMPAFGVVSHIIPSLAHKPIFG 275



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 284 NXXVPLILGAPAIAFPR 334
           N  VPL++GAP +A+PR
Sbjct: 87  NYLVPLMIGAPDVAYPR 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,712
Number of Sequences: 5004
Number of extensions: 25503
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)