Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_P01
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.1  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/90 (26%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
 Frame = +2

Query: 617 PXKLPRALSCFXPCPXTGYLSAFPPLRGXVAP---FSXXTLXXSPXXCRSXRSXLGCVPX 787
           P   P  ++   P    G  SA PP+ G   P       T    P         +   P 
Sbjct: 684 PLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743

Query: 788 PPXXPRPXXPLSGYLSXXXPXPXXXPPYXP 877
           PP  P    P+SG      P P   PP  P
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/90 (26%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
 Frame = +2

Query: 617 PXKLPRALSCFXPCPXTGYLSAFPPLRGXVAP---FSXXTLXXSPXXCRSXRSXLGCVPX 787
           P   P  ++   P    G  SA PP+ G   P       T    P         +   P 
Sbjct: 684 PLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743

Query: 788 PPXXPRPXXPLSGYLSXXXPXPXXXPPYXP 877
           PP  P    P+SG      P P   PP  P
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/90 (26%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
 Frame = +2

Query: 617 PXKLPRALSCFXPCPXTGYLSAFPPLRGXVAP---FSXXTLXXSPXXCRSXRSXLGCVPX 787
           P   P  ++   P    G  SA PP+ G   P       T    P         +   P 
Sbjct: 267 PLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 326

Query: 788 PPXXPRPXXPLSGYLSXXXPXPXXXPPYXP 877
           PP  P    P+SG      P P   PP  P
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,143,075
Number of Sequences: 27780
Number of extensions: 236460
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)