Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_O21
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    40   3e-05
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    40   3e-05
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   1.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.2  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +1

Query: 337 CSENEIYVKCVQAQCSPMTCSKKDGPKICPLVEEKSCKAGCVCKEGYLKDDSGKCVAREN 516
           C  NEI+ +C   +C    C       +C     K C  GCVC+ GYL++    CV R  
Sbjct: 37  CPSNEIFSRC-DGRCQRF-CPNVVPKPLCI----KICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 517 C 519
           C
Sbjct: 91  C 91



 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +1

Query: 139 CSENEIYVKCVQAHCGPRTCSEKDLPMPCPLVRQEYCKAGCLCKEGYLKDDSGKCVAREN 318
           C  NEI+ +C    C  R C      +P PL  +  C  GC+C+ GYL++    CV R  
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNV---VPKPLCIK-ICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 319 C 321
           C
Sbjct: 91  C 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +1

Query: 337 CSENEIYVKCVQAQCSPMTCSKKDGPKICPLVEEKSCKAGCVCKEGYLKDDSGKCVAREN 516
           C  NEI+ +C   +C    C       +C     K C  GCVC+ GYL++    CV R  
Sbjct: 37  CPSNEIFSRC-DGRCQRF-CPNVVPKPLCI----KICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 517 C 519
           C
Sbjct: 91  C 91



 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +1

Query: 139 CSENEIYVKCVQAHCGPRTCSEKDLPMPCPLVRQEYCKAGCLCKEGYLKDDSGKCVAREN 318
           C  NEI+ +C    C  R C      +P PL  +  C  GC+C+ GYL++    CV R  
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNV---VPKPLCIK-ICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 319 C 321
           C
Sbjct: 91  C 91


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -1

Query: 377 CAWTHFTYISFSEQRSEFGQFSRATHLPLSSFRYPSLHRHPALQYSCLTNGQGIGKSFSE 198
           C+ T   Y S  +  S+     R+THL +S        R P+ + SC +   G   S  E
Sbjct: 365 CSQTSVHY-SNGQTHSQLCPTPRSTHLKVSGINRVGSTRRPSRRNSCESQMMGDEMSLRE 423



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 61  WSXRCRLVWIVVLAFVNIIVL 123
           WS    LV ++VLA VN++V+
Sbjct: 60  WSGPWILVTLIVLAIVNVMVV 80


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = -2

Query: 595 STSLGCTXLGHXSHIFHFQSRGQNLGSFLGRHIYRYRLSDIPLYTRIRLCRTFPPPMG 422
           +TS G T L H     H Q  G  + +  GRH+  +     P YT   +  T  P  G
Sbjct: 183 TTSTG-TRLLHGILSQHPQQHGLGVQNGYGRHLPGHAQMGRPSYTTATMATTSTPGSG 239



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -2

Query: 397 STSLGCTVL-GHISRIFHFQSRGQNLGSFLGRHIYRYRLSDIPLYTGIRLCSTLASPMGR 221
           +TS G  +L G +S+  H Q  G  + +  GRH+  +     P YT   + +T     G 
Sbjct: 183 TTSTGTRLLHGILSQ--HPQQHGLGVQNGYGRHLPGHAQMGRPSYTTATMATTSTPGSGS 240

Query: 220 A*VSPS 203
              SP+
Sbjct: 241 LPASPA 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,832
Number of Sequences: 438
Number of extensions: 4285
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)