Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_O20
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0479 + 3606663-3607448 32 0.70
02_05_0686 - 30900748-30902167,30903442-30904742 31 0.92
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 30 2.8
07_01_0080 + 587674-588510 29 4.9
04_04_0832 - 28507448-28507516,28507902-28507980,28508527-28509614 29 4.9
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.9
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 29 4.9
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 29 6.5
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 6.5
07_03_1136 + 24218601-24218734,24218769-24219906 29 6.5
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 6.5
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 8.6
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -3
Query: 809 PXPXXXXXGXXPXXXPXXXKXXXGGXPPXXGXXXXPPXXXXXXPPPP 669
P P G P P GG PP PP PPPP
Sbjct: 203 PPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPP 249
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = -2
Query: 828 AFXKKXPKXGXXFXGXXPXXGPXXXKXXXXGXPPXXGX-XXXPPLXGGXXPPPPPXXXXP 652
AF P F P GP + G PP PP PPPPP P
Sbjct: 196 AFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPPPGPQQP 255
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 0.92
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -1
Query: 703 PPXGXXXPPPPPXXPXPXXFXXGKGXXPXKKXPXXP 596
PP PPPPP P P G P K P P
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPP 365
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = -2
Query: 732 PPXXGXXXXPPLXGGXXPPPPP-XXXXPXFFXGEKXXGPXKKXPXPXGG 589
PP G PP G PPPP P G K GP P P GG
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGP--PPPPPKGG 385
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = -2
Query: 765 PXXXKXXXXGXPPXXGXXXXPPLXGGXXPPPPPXXXXPXFFXGEKXXGPXKKXPXPXGG 589
P K PP PP PPPPP P GP P P GG
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPP--PPPPPKGPSPPPPPPPGG 372
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -1
Query: 730 PXXXGXXXSPPXGXXXPPPPPXXPXP 653
P G PP PPPPP P P
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSP 364
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -1
Query: 718 GXXXSPPXGXXXPPPPPXXPXPXXFXXGKGXXP 620
G +PP PPPPP P P + G P
Sbjct: 25 GFPVAPPPPMGPPPPPPMPPVPVMYLRGVPPPP 57
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 706 SPPXGXXXPPPPPXXPXPXXF 644
SPP PPPPP P P F
Sbjct: 103 SPPPPPPPPPPPPPPPPPPLF 123
>04_04_0832 - 28507448-28507516,28507902-28507980,28508527-28509614
Length = 411
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 623 PXXFSPXKXXGXXXXGGGGGXXPPXRGG 706
P +P G GGGGG PP GG
Sbjct: 18 PAATAPSSVTGGALRGGGGGGAPPVAGG 45
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -1
Query: 706 SPPXGXXXPPPPPXXPXPXXFXXGKGXXPXKKXPXXP 596
+PP PPPPP P P K P P P
Sbjct: 348 APPPPPPPPPPPPPPPPPKLNTAPKPPPPPPPPPSVP 384
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/45 (28%), Positives = 14/45 (31%)
Frame = -1
Query: 730 PXXXGXXXSPPXGXXXPPPPPXXPXPXXFXXGKGXXPXKKXPXXP 596
P SPP PPPPP P P + P P
Sbjct: 67 PAGIAVHPSPPPPPPPPPPPPPVPVPPAYSVTSSVPPYSMTSSLP 111
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 621 GXXPFPXKKXXGXGXXGGGGGXXXPXGG 704
G P KK G G G GGG P GG
Sbjct: 320 GNHPAQGKKGGGGGGGGQGGGVGGPMGG 347
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = -1
Query: 706 SPPXGXXXPPPPPXXPXP---XXFXXGKGXXPXKKXPXXP 596
+PP PPPPP P P F G G ++ P P
Sbjct: 47 APPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPP 86
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = -2
Query: 738 GXPPXXGXXXXPPLXGGXXPPPPPXXXXPXFFXGEKXXGPXKKXPXPXGGG 586
G PP G P GG PP P G + P P GGG
Sbjct: 89 GLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGG 139
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +2
Query: 653 GXXXXGGGGGXXPPXRGGXXXXPXXGGXPXXNXFXXXGPXXG 778
G GGGGG PP GG GG + G G
Sbjct: 56 GGGYGGGGGGGGPPYYGGGGGGGGGGGGQGRGYYDDGGDGRG 97
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 703 PPXGXXXPPPPPXXPXPXXFXXGKGXXP 620
PP PPPPP P P KG P
Sbjct: 359 PPPPPPPPPPPPPRPPPPPPPIKKGAPP 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,402,557
Number of Sequences: 37544
Number of extensions: 270160
Number of successful extensions: 2512
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1941
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -