Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_O19
         (1131 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.17 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   2.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.8  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   4.8  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   8.4  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 22/80 (27%), Positives = 26/80 (32%)
 Frame = +3

Query: 534  PXXPXAXTLSPXKXPSPXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPPH 713
            P  P +        P+P  P    P PP   P P  P      PPP P S       P  
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS--APPPPLPASSAPSVPNPGD 1748

Query: 714  XHXLLXXGXTLXXXXXTLTS 773
               LL    T      T+T+
Sbjct: 1749 RSALLQQIHTGTRLKKTVTT 1768



 Score = 29.5 bits (63), Expect = 0.90
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +3

Query: 591  PXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPP 710
            P H   +PP        P      PPP P S   P S PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +3

Query: 894  PXPXXSXXPPXXSLXL*XPHPLTLXXPPXAPPRXLXRIGPFXGVPP 1031
            P    S  PP  S     P P+++  PP APP      GP    PP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP---AGPPSAPPP 1733


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = -1

Query: 1068 GXGXGXXXRXXXRXGRRXRGRCGXXGXEGXXGXSXV*EGGGXRGGGXXEGG 916
            G   G       R G R  GR G  G  G  G +    GG   G G  +GG
Sbjct: 20   GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 582 PXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPPHXH 719
           P  P H  P   H+ P P         PPP  H        PP  H
Sbjct: 208 PPPPMHHKPGE-HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 252



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 582 PXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPPHXH 719
           P  P H  P   H+ P P         PPP  H        PP  H
Sbjct: 221 PPPPMHHEPG-EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 265



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 582 PXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPPHXH 719
           P  P H  P   H+ P P         PPP  H        PP  H
Sbjct: 234 PPPPMHHEPGE-HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 278



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 582 PXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPPHXH 719
           P  P H  P   H+ P P         PPP  H        PP  H
Sbjct: 247 PPPPMHHEPGE-HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 291



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 582 PXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPPHXH 719
           P  P H  P   H+ P P         PPP  H        PP  H
Sbjct: 260 PPPPMHHEPG-EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 304



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 582 PXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPPHXH 719
           P  P H  P   H+ P P         PPP  H        PP  H
Sbjct: 273 PPPPMHHEPGE-HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 317



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 582 PXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPPHXH 719
           P  P H  P   H+ P P         PPP  H        PP  H
Sbjct: 286 PPPPMHHEPGE-HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 330



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = +3

Query: 591 PXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPPHXH 719
           P H  P   H+ P P         PPP  H        PP  H
Sbjct: 198 PAHHEPGE-HMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMH 239



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +3

Query: 597 HXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPPHXH 719
           H PP P H  P    P      PPP  H        PP  H
Sbjct: 206 HMPPPPMHHKPGEHMP------PPPMHHEPGEHMPPPPMHH 240



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = +3

Query: 582 PXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPP 710
           P  P H  P   H+ P P         PPP  H        PP
Sbjct: 299 PPPPMHHEPG-EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 561 SPXKXPSPXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXP-HSXXAPXSXPP 710
           +P   P+P  P      P    P P  P       PP P  +   P S PP
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
 Frame = +3

Query: 513 PXAXLAXPXX-PXAXTLSPXKXPS-PXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSX 686
           P + L  P   P   ++ P    S P  P   PP P  + P P  P      PP  P   
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP-PAQPAAPVKSPPSAPSLP 191

Query: 687 XAPXSXPP 710
            A    PP
Sbjct: 192 SAVPPMPP 199



 Score = 27.1 bits (57), Expect = 4.8
 Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
 Frame = +3

Query: 513 PXAXLAXPXXPXAXTLSPXKXPS---PXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHS 683
           P +  + P  P      P   P    P  P   PPS P + P    P      PPP   +
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL-PSAVPPMPPKVPPPPLSQA 209

Query: 684 XXAPXSXPP 710
             A  S  P
Sbjct: 210 PVANTSSRP 218


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 26/100 (26%), Positives = 29/100 (29%)
 Frame = +3

Query: 411  PXPLXPPDXXNXPXSXXXSRAXXXXXXXXXXXSXPXAXLAXPXXPXAXTLSPXKXPSPXX 590
            P PL   +  + P S                 + P A LA    P    LS    P P  
Sbjct: 970  PPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLAR--VPPVPKLSSKAPPVPLP 1027

Query: 591  PXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPP 710
                PP P    P    P       PP P S     S PP
Sbjct: 1028 SADAPPIP---VPSTAPPVPIPTSTPPVPKSSSGAPSAPP 1064


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +3

Query: 603 PPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPPH 713
           PPS P   P    P      PPP P       S PP+
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPN 269



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
 Frame = +3

Query: 603 PPSPPH---IXPXPXXPXKRXXXPPPXPHSXXAPXSXPP 710
           PP PP        P  P  R   PPP P S  +    PP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 18/59 (30%), Positives = 19/59 (32%)
 Frame = +3

Query: 534 PXXPXAXTLSPXKXPSPXXPXHXPPSPPHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPP 710
           P  P   +L P   PS   P   PPS P   P            PP P    A    PP
Sbjct: 415 PPVPTPPSLPPSAPPS--LPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = +3

Query: 513 PXAXLAXPXXPXAXTLSPXKXPSPXXPXHXPPSPPHIXPXPXXP 644
           P A    P  P A  L      +P  P   P  PP   P P  P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
 Frame = +3

Query: 570 KXPSPXXPXHXPPSP-PHIXPXPXXPXKRXXXPPPXPHSXXAPXSXPP 710
           K P P  P    P+P P   P P         PPP P    A    PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = -3

Query: 709 GGXEXGAX*EWGXGGGXXXRLXGXXGXGXMXGGLGGXWXGXXGLG 575
           GG E G     G GGG      G  G G   GG GG   G  G G
Sbjct: 231 GGFEGGPG---GFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = -3

Query: 676 GXGGGXXXRLXGXXGXGXMXGGLGGXWXG-XXGLGXFXG 563
           G GGG      G  G G   GG GG   G   G G F G
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/50 (32%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
 Frame = +3

Query: 564 PXKXPSPXXPXHXPPSPPHIXPXPXXPXKRXXXPPP-XPHSXXAPXSXPP 710
           P   PSP  P      PP I   P         P P   H   +P S PP
Sbjct: 167 PVSLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHNHPYSSPTSYPP 216


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
            protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
 Frame = -1

Query: 1011 GRCGXXGXEGXXGXSXV*EGGGXRG--GGXXEGGXWXEXXXGVXXGXRPXER 862
            GR G  G  G  G S    GG  RG  GG   GG       G   G R   R
Sbjct: 136  GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSR 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,018
Number of Sequences: 5004
Number of extensions: 17041
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 601638964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)