Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_O18
         (1202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.74 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.7  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    28   2.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 21/77 (27%), Positives = 23/77 (29%)
 Frame = +3

Query: 408 PPXLPPXRXRXHSXSRRPXXAXXSPNQXPXXSXXPXXRPPXXRXXXPXPXTLPXPXPRSP 587
           PP LPP        S  P     +P   P     P   PP        P   P      P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA-PPLPAGMPAAPPLPPAAPAPPP 478

Query: 588 XPXPXPAXSXYLXAXIP 638
            P P PA      A +P
Sbjct: 479 APAPAPAAPVASIAELP 495



 Score = 26.2 bits (55), Expect = 9.1
 Identities = 20/78 (25%), Positives = 22/78 (28%)
 Frame = +1

Query: 478 PPTXXPRXPXXPXXAXXXXAPXXPXXKPXXXPAPGHLXXAXPLXPRXTXXXXSQLSLXXT 657
           PP   P  P     A            P   P P  L  + P  P         L +   
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPV-PTPPSLPPSAP--PSLPPSAPPSLPMGAP 444

Query: 658 XVPXXTPSXPAXPPXPRG 711
             P   PS P  PP P G
Sbjct: 445 AAPPLPPSAPIAPPLPAG 462


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
 Frame = +3

Query: 411 PXLPPXRXRXHSXSRRPXXAXXSPNQXPXXSXXPXXRPPXXRXXXPXPXTLPXP-XPRSP 587
           P   P      S  R P  A   P+  P     P   PP      P P +LP P  P +P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPS---PASAPPIPSKAPPIPSSLPPPAQPAAP 180

Query: 588 XPXPXPAXS 614
              P  A S
Sbjct: 181 VKSPPSAPS 189



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
 Frame = +3

Query: 408 PPXLPPXRXRXHSXSRRPXXAXXSPNQXPXX--SXXPXXRPPXXRXXXPXPXTLPXPXPR 581
           PP   P R      S  P  A   P++ P    S  P  +P       P   +LP   P 
Sbjct: 139 PPTSAPPRPSIPPPS--PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196

Query: 582 SPXPXPXPAXSXYLXAXIPTXAXIXXRPXGH 674
            P   P P  S    A   +       P GH
Sbjct: 197 MPPKVPPPPLSQAPVANTSSRPSSFAPPAGH 227


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 136 WALLYSFFFNYFITXNNSKTTC 71
           +A+ +++FFNYF+T     TTC
Sbjct: 156 FAVSWNYFFNYFVTFPFELTTC 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,461
Number of Sequences: 5004
Number of extensions: 16834
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)