Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_O09
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 31 0.88
01_05_0560 - 23288078-23288370,23288448-23288733 30 2.7
12_02_1193 + 26891619-26892456,26892545-26893884 29 4.7
01_01_0206 - 1770622-1771347 29 4.7
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093... 29 6.2
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 29 6.2
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 29 6.2
06_03_0501 + 21476715-21476785,21477045-21477786,21478097-214782... 29 6.2
10_08_0794 - 20624517-20624666,20624977-20625082,20625305-206254... 28 8.2
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 31.5 bits (68), Expect = 0.88
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 260 PRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHT 400
P P T H I S +DD+ R VR +P+N ++ + S +T
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110
>01_05_0560 - 23288078-23288370,23288448-23288733
Length = 192
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 257 VPRAPSTADHPILPSKIDDVQLDPNRRYVRS 349
+PR P A H +L S DDV DP+ RYV S
Sbjct: 120 LPR-PLRAGHYVLSSPPDDVDHDPDHRYVFS 149
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +2
Query: 212 RQAGQEPLWLYQGDNVPRA-PSTADHPILPSK---IDDVQLDPNRRYV--RSVTNPENNE 373
RQA W+Y G+ PRA P AD PS+ V+L P +R V S ++ ++ +
Sbjct: 308 RQAAGRANWVYNGELPPRANPQKADDEAGPSQKRMRGQVKLAPKKRRVPPSSDSDADDED 367
Query: 374 ASIEH 388
+ EH
Sbjct: 368 DAEEH 372
>01_01_0206 - 1770622-1771347
Length = 241
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 461 LYPRGKL-PVPTLPPFNPKP 517
L+ GKL PVP LPP +PKP
Sbjct: 68 LFAGGKLLPVPPLPPVHPKP 87
>12_02_0693 -
22207582-22207620,22208421-22208597,22209258-22209347,
22210215-22210280,22210473-22210570,22210669-22210789,
22210875-22212477,22213332-22213915
Length = 925
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 155 FIQPTFMPPPTQRPITRTVRQAGQEPLWLYQGDNVPR 265
F QPT PPP++ P V+Q + DN PR
Sbjct: 377 FTQPTSAPPPSRTPPPLAVKQKPHGSQAKRKDDNYPR 413
>09_04_0727 + 19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 485 VPTLPPFNPKPIYIDMGNRYRRHASED-QEELRQYNEHFL 601
+P LP NP+P+ D G AS+D E+L F+
Sbjct: 1119 LPELPELNPEPMVTDNGENAAMPASDDIPEQLEVVKRRFM 1158
>06_03_0640 - 23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 440 NTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMGNRYRRHASEDQ--EELRQYN 589
N +L R +P P LPP P P++ M +++H + Q + ++QY+
Sbjct: 936 NQSNLNLQQTRHAIPQPPLPP--PGPVHQQMHAYHQQHQQQQQHYQSIQQYH 985
>06_03_0501 +
21476715-21476785,21477045-21477786,21478097-21478246,
21478350-21478589,21479968-21480048,21480144-21480185,
21480953-21481033,21481271-21481368,21482574-21482667,
21482733-21482861,21483881-21483931,21484023-21484049,
21484280-21484387,21484956-21485201
Length = 719
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 97 VFSIQFSSGAVLCSGFVPEVHPADLHATANTA-PDNTYSATSWPG 228
V + F++G +L +GFV +H A+ HA +N P + + +PG
Sbjct: 109 VLAKAFAAGVILATGFVHMLHDAE-HALSNPCLPHSPWRRFPFPG 152
>10_08_0794 -
20624517-20624666,20624977-20625082,20625305-20625400,
20625577-20625623,20625751-20626029,20626160-20626248,
20626348-20626440,20626593-20626688,20627167-20627274,
20627410-20627728
Length = 460
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 185 TQRPITRTVRQAGQEPLWLYQGDNVPRAPSTA 280
T PI + + Q+G +W+Y GD R P+T+
Sbjct: 357 TVLPIVKKLTQSGLR-IWIYSGDTDARIPTTS 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,373,431
Number of Sequences: 37544
Number of extensions: 517525
Number of successful extensions: 1599
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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