Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_O08
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047     30   2.7  
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145...    29   3.6  
10_01_0086 - 1064650-1065379,1065796-1065950,1066029-1066141,106...    28   8.3  

>03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047
          Length = 368

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +2

Query: 17  LPSRAXLHLCVCTPAFFXPAGSRPPGLLGRGVSLXASWWL 136
           L  R     C          GSRP   L RGV   A+WWL
Sbjct: 327 LRERVDAAACAEDDGAMATCGSRPRAYLSRGVVNWANWWL 366


>02_01_0223 +
           1453478-1453750,1455788-1456018,1456066-1456200,
           1457918-1457971,1458417-1458482,1458593-1458679,
           1459338-1459394,1459470-1459500,1459577-1459634,
           1459710-1459761,1459881-1459917,1460008-1460210,
           1460556-1460633,1460683-1460853,1461126-1461239
          Length = 548

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 633 HLHHKGFTDDMAVNEEVGIDLVRSGQVETLAVGSVEARG 517
           H HH G   D A   EV  D V +      A G+V+ RG
Sbjct: 24  HHHHDGAAGDSAAAAEVPQDKVVAAAAAAAAAGNVQRRG 62


>10_01_0086 -
           1064650-1065379,1065796-1065950,1066029-1066141,
           1066238-1066345,1066773-1066890,1066996-1067069,
           1067595-1067690,1068062-1068455
          Length = 595

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -1

Query: 168 HXXPXXRPAARSHHEAXRLTPRPSRPGGREPAGXKNA 58
           H  P    A   HH A R  P P  P  R P+G   A
Sbjct: 86  HYFPVTEVALALHHAAARQGPPPPPPPPRPPSGSAGA 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,671,638
Number of Sequences: 37544
Number of extensions: 301110
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)