Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_O05
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    62   1e-10
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    27   2.7  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    27   4.8  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   8.4  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    26   8.4  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   8.4  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 42/112 (37%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
 Frame = +2

Query: 470 GRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTST-RISLGNFKLPKHFN 646
           GR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI TS  +I +    + K F 
Sbjct: 63  GRFRGKRVVVLSQLED-TLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK-FT 120

Query: 647 DDYFKXNKXCVKRTVKRKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAI 802
             YF       KR+   K+ +  FA    K     +R  DQK VD  ++ AI
Sbjct: 121 KAYFAKQ----KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAI 168



 Score = 29.1 bits (62), Expect = 0.90
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +1

Query: 295 QIGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCI 459
           ++ G KNGG R V P  +    +YP  +E +  +A    RP      ++R +L  GTVCI
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCI 59

Query: 460 LL 465
           LL
Sbjct: 60  LL 61


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +3

Query: 654 TSRXIRXASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEARXDKKV 827
           TS  +   S+   + K + T LP+ K+N F  S+++P++  +  L ++ S+   D+ V
Sbjct: 182 TSGDLTIRSDSNYSIKSLTTWLPKWKKNDFKTSNSQPVK--NLDLINRASDLMSDRNV 237


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 537 PVTKSRPLGRIPTSTTLLPACLPXEENANSSYLQVGSDPAYMLAE 403
           P+ +  P GR+P     L   L  E     S+ QV ++ AY++ +
Sbjct: 148 PLNEPFPYGRLPIRGVNLGGWLSMEPFITPSFFQVKNETAYLVKD 192


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +2

Query: 332 YPSNVGSPST-----PLRRKSVPHLVAVHSASMY 418
           Y SNV SPS      P R  ++  L+ VHS  MY
Sbjct: 96  YVSNVPSPSDVFLRIPAREATLEELLQVHSQEMY 129


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 564 SGHELNAKGPVTKSRPLGRIPTSTTLLPACLPXEENANSSYLQVGS 427
           SG+   + GP   +   G +P   T+LP       N  SS  Q+GS
Sbjct: 168 SGNIAMSGGPTNTASTSGPVPHDMTVLPQTDSNTSNLMSSGSQLGS 213


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 498 STTLLPACLPXEENANSSYLQVGSDPAYMLAEWTATR*GTDFLLSGVEGLPT 343
           +T+LLP  +P + + +SS  Q    P+Y  + ++    GTD L +   G P+
Sbjct: 354 NTSLLPTAMPSDVSISSSLQQQPIHPSYD-SRFSKAPQGTDALAALGYGTPS 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,897
Number of Sequences: 5004
Number of extensions: 60558
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)