Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_O05
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...   115   5e-26
Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score =  115 bits (276), Expect = 5e-26
 Identities = 64/143 (44%), Positives = 85/143 (59%), Gaps = 1/143 (0%)
 Frame = +2

Query: 470 GRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFN 646
           GRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS ++++   K+P+H N
Sbjct: 82  GRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHIN 141

Query: 647 DDYFKXNKXCVKRTVKRKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGSPXRQEG 826
           D+YFK      +++  +K G +IFA+ K +Y  SEQRK D KTVD  ++ AI      + 
Sbjct: 142 DEYFK------RKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKF 195

Query: 827 XPRXTSXGAFGLRSSQYPHRXGF 895
                    F L  +QYPH+  F
Sbjct: 196 LFGYLGT-RFSLGKNQYPHKMQF 217


>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 515 WAEFQQVQPSCLHVYQXRRMQTVPIFRLGRILRTCLLNGRP 393
           W++ + V+ SC HV +   + T+P   + + +R C + GRP
Sbjct: 183 WSQQESVRNSCKHVSRPTSLHTIPA-HIEKAVR-CAMYGRP 221


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 515 WAEFQQVQPSCLHVYQXRRMQTVPIFRLGRILRTCLLNGRP 393
           W++ + V+ SC HV +   + T+P   + + +R C + GRP
Sbjct: 183 WSQQESVRNSCKHVSRPTSLHTIPA-HIEKAVR-CAMYGRP 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,214,644
Number of Sequences: 27780
Number of extensions: 365975
Number of successful extensions: 950
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)