Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N24
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    26   6.2  
SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.2  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   8.2  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   8.2  

>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 715 HKQFTSVSVVIGGCCLIGSGVLCVSWSPRAPLAAGGS*RLKLGEAP-LPI 569
           HK+F   S   G C +I +G+   +++PRA    GG   +  G  P +PI
Sbjct: 408 HKKF---SFFTGSCLIIIAGLAVANYAPRAWSRYGGLLMIGFGLGPTVPI 454


>SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 33  ILKIRNVDFPASRRTPASLVRAKMSSIRNTNVYL*RL 143
           I  IRN  FP S    AS V +  S I NTN +  R+
Sbjct: 7   IFIIRNFIFPFSNCRYASTVPSPRSGISNTNDFFKRI 43


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 436 PERPSLLPWVRPPXCSTGALSAESVSPGSHRFCRST 543
           P +P ++ WVR    +T    ++SVS     F  S+
Sbjct: 96  PSKPRIVSWVRKTASNTSVAGSDSVSRDKIPFSASS 131


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 53  RFSRVEAYARFVSSRQNVINSKYERIFITII*SNSLFYILFLTSVEKK 196
           R   ++A+  F+++R + INS  E+   T     S F ILF   ++++
Sbjct: 417 RIEGIKAHEMFLNNRVSEINSSLEKQLTTQKELRSRFEILFPVKLQRE 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,723
Number of Sequences: 5004
Number of extensions: 66099
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)