Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N24
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0999 - 29583959-29584711,29584797-29585021,29585163-295853...    30   2.8  
01_05_0534 + 22999876-23000333,23000835-23000949                       29   5.0  
02_02_0378 + 9561775-9562947                                           29   6.6  

>03_05_0999 -
           29583959-29584711,29584797-29585021,29585163-29585360,
           29585472-29586056
          Length = 586

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 700 SVSVVIGGCCLIGSGVLCVSWSPRAPLAAGG 608
           + SV +G   +IG  VLC++W   A    GG
Sbjct: 503 ATSVALGAGAIIGGSVLCLAWGLFATFVRGG 533


>01_05_0534 + 22999876-23000333,23000835-23000949
          Length = 190

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 448 SLLPWVRPPXCSTGALSAESVSPGSHRFCRSTY 546
           SL P +       G ++A +VSP  HR CRS++
Sbjct: 2   SLAPSIPSIKVKVGGVAAVAVSPPRHRACRSSF 34


>02_02_0378 + 9561775-9562947
          Length = 390

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 433 LPERPSLLPWVRPPXCSTGALSAESVSPGSHRFCRSTY*C*GIIVR 570
           LP RPS LPW+  P  +    +A +       F R+TY   G+ +R
Sbjct: 42  LPRRPSFLPWLLAPWPTPDDDTAAAGGACRCVFSRTTYHAPGLGIR 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,254,429
Number of Sequences: 37544
Number of extensions: 484159
Number of successful extensions: 1375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)