Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N24
         (885 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069289-1|AAL39434.1| 1137|Drosophila melanogaster GM14421p pro...    31   2.1  
AE014298-2419|AAF48620.1| 1137|Drosophila melanogaster CG9902-PA...    31   2.1  
BT001815-1|AAN71570.1|  107|Drosophila melanogaster RH36596p pro...    30   4.9  
AF068271-1|AAC19245.1|  893|Drosophila melanogaster mutL homolog...    29   6.5  

>AY069289-1|AAL39434.1| 1137|Drosophila melanogaster GM14421p
           protein.
          Length = 1137

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 451 ARAVPVAEFSPKSFLFVRPHSRLELFALASEWRTSK 344
           AR +   EFS K F+F   HS L++F L  + R S+
Sbjct: 19  ARKLEYDEFSAKMFVFCNKHSALDVFELMGDDRLSQ 54


>AE014298-2419|AAF48620.1| 1137|Drosophila melanogaster CG9902-PA
           protein.
          Length = 1137

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 451 ARAVPVAEFSPKSFLFVRPHSRLELFALASEWRTSK 344
           AR +   EFS K F+F   HS L++F L  + R S+
Sbjct: 19  ARKLEYDEFSAKMFVFCNKHSALDVFELMGDDRLSQ 54


>BT001815-1|AAN71570.1|  107|Drosophila melanogaster RH36596p
           protein.
          Length = 107

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 484 WSSXEASPKARARAVPVAEFSPKSFLFVRP 395
           WS   A PKARA   P+A+     F F +P
Sbjct: 18  WSPVRARPKARAAIDPIAQAGDYRFAFFQP 47


>AF068271-1|AAC19245.1|  893|Drosophila melanogaster mutL homolog
           PMS2 protein.
          Length = 893

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 724 RHVHKQFTSVSVVIGGCCLIGSGV--LCVSWSPRAP 623
           R++ K+FT +  ++   CL+  GV  LC + +P+ P
Sbjct: 186 RNIKKEFTKMCQILQAYCLVTKGVRILCSNHTPKGP 221


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,601,249
Number of Sequences: 53049
Number of extensions: 774876
Number of successful extensions: 2087
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4311772920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)