Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N22
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.6  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    28   2.1  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    28   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.7  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    27   2.7  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.7  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   4.7  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   6.3  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    26   8.3  

>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 433 DAHCDNVQHQTDDPSTSSSLHSLGLPRTPSKLPIAQRKTSTF 308
           D+ C+N++       T+++  SL  P+TP KL I    +  F
Sbjct: 259 DSSCENIRILGFKAETNAATISLFAPKTPEKLQITLSSSDVF 300


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 388 TSSSLHSLGLPRTPSKLPIAQRKTSTF 308
           +S+  H LGLP  PS +P+   +  +F
Sbjct: 311 SSTIRHKLGLPEVPSAMPVPNAQNESF 337


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 427 EHHNKQFDHDAFLGEDQAKTFDQLSPEE--SKRRLGEIADKIDSDQDGFITLV 579
           E +++QF +   L E       +++ +E   KRRL   A K   D+DGF+T+V
Sbjct: 136 ESYDRQFVNPRVLAESVDSYMKRVTKKEIAEKRRL--FAMKNQPDEDGFVTVV 186


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +1

Query: 361  VPTNEETKRLMDHLSDAEHYRNEHHNKQFDHDAFLGEDQAKTFDQLSPEESKRRLGEIAD 540
            V   E + R+   LSD      +H         F  ED   ++DQ SPE ++ R   I+ 
Sbjct: 1061 VRLEELSTRVSKMLSDINEV--DHTIASLSLKLFQAEDTKNSYDQTSPEATQERNRTISS 1118

Query: 541  KI 546
            K+
Sbjct: 1119 KL 1120


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 457 RHDQTACY-DAHCDNVQHQTDDPSTSSSLHSLGLPR 353
           R +Q   Y D HC +  H T  P++  + HS  L R
Sbjct: 223 RQNQYFFYLDPHCTHFAHTTTQPASEETFHSATLRR 258


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 382 KRLMDHLSDAEHYRNEHHNKQFDHDAFLGEDQAK---TFDQLSPEESKRRLGEIADKI 546
           +RL +HL +++    +H NK+ D +    E++ K     ++  PE  K+  G   +K+
Sbjct: 179 QRLAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKV 236


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 688 PPKSRTXRY*GXAVSNVFPHPHRCIASEYSGSNLSTQREL*NHPGL 551
           P +SR   +   + S +  H H   +S +S   L+T +E+ N P L
Sbjct: 417 PSRSRATIHERPSSSILHRHAHSLTSSSFSTKTLATTKEIQNSPTL 462


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 415 VQHQTDDPSTSSSLHSLGLPRTP 347
           V HQ   P TS+S+ S GL +TP
Sbjct: 413 VYHQVFYPPTSTSVSSYGLGKTP 435


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 278 VQRMFLIIRPKC*GLSLCYWQF 343
           +Q++ L+I  KC G  L  WQF
Sbjct: 80  IQKLILVITSKCSGEDLERWQF 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,333
Number of Sequences: 5004
Number of extensions: 54244
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)