Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N18
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.49 
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   3.5  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   8.1  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 413 TGATREADYATFKNNAASDQCGRPRRPHSARRL 511
           TGA+ + +Y+ F +N +S     PR    ARRL
Sbjct: 501 TGASNQPNYSPFADNPSSSNVSIPRSSSEARRL 533


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 231 HSSKKATTQETTLYSAFYAHRETIKLKLNETSGF 130
           H S   TT+E  L    Y   E+IK   N +SGF
Sbjct: 506 HISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 320 ATALTKQSGQLPETITMWFSGIRTKSLLWAFTGATREADYAT 445
           +TALT  +G +P+      +G+     +WA  G    A  AT
Sbjct: 185 STALTNVAGGIPDLFPEDTAGVPMSLFVWACAGGAIGAPMAT 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,791
Number of Sequences: 5004
Number of extensions: 60480
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)