Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N18
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    35   9e-04
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   4.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 35.1 bits (77), Expect = 9e-04
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 653 CGGVLFNARYVLTAAHCLIGAXKXKSVIDYG 745
           CG  + + RYVLTAAHC+I     K  I  G
Sbjct: 188 CGATIISKRYVLTAAHCIIDENTTKLAIVVG 218


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 808 PPXEIPXLAVYPHQGXXT 861
           PP E P + V PHQ   T
Sbjct: 490 PPREAPLVGVQPHQDSAT 507


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 543 GHTR*QNLWGVSSRNLDEFPWMALLG 620
           G  R  N +  S RNLD+   + L+G
Sbjct: 462 GENRISNFYNGSFRNLDQLTGLRLIG 487



 Score = 21.8 bits (44), Expect = 8.5
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -2

Query: 567 IDSVTLCVHSRIDSEEPGTSLLALWGRRGRPHWSEAALFLNVA*SAS---LVAPVKAHNK 397
           I++  LC+ S I SE  GTS    W   G      A   L V    +   LVA +    K
Sbjct: 11  INAAFLCLASTILSESAGTS--CKWLSEGGNDTRSADCTLRVLDPGAITGLVASLDGALK 68

Query: 396 LLVRIPENH 370
           L +R  + H
Sbjct: 69  LRIRCSDVH 77


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -1

Query: 409 GPQQTLGTYP*KPHCDCLRKLTTLLCKGRCSKADN 305
           GPQ  LG       C C + +     K  CSK  N
Sbjct: 71  GPQNYLGICAEGMQCSCNKCIGCSAEKFECSKTSN 105


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 340 LLCKGRCSKADNS*EQSYNETHS 272
           L+   RC+  DN     YN  H+
Sbjct: 408 LIRNSRCANFDNQDNNHYNHNHN 430


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 149 NFSFIVSLCA*NAE*SVVSCVVAFLELC 232
           N+SF   +C       V+SC  + L LC
Sbjct: 106 NWSFGTIMCDLWVSFDVLSCTASILNLC 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,366
Number of Sequences: 438
Number of extensions: 4631
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)