Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N14
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   7.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 556 PPXXXXXGGXXPXPXXQXKXXXXXXPXPPPPP 651
           PP     GG  P P           P PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +2

Query: 560 PXXXXXXGXXPPPXXNXXXXXXXXXXPPPPPP 655
           P      G  PPP             PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 22.6 bits (46), Expect(2) = 7.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 638 PPPPPPXXXP 667
           PPPPPP   P
Sbjct: 361 PPPPPPRSAP 370



 Score = 21.4 bits (43), Expect(2) = 7.6
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +2

Query: 557 PPXXXXXXGXXPPPXXNXXXXXXXXXXPPPPPP 655
           PP          PP  N          PPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSL---PPPPPP 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,614
Number of Sequences: 5004
Number of extensions: 22722
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)