Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N13
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 511 MYVAIQAVLSLYASGSYHRYRARLRRWCLPHRTHLRRLRSAPRHPP 648
           +Y   ++  SL A  ++HR        C P   +L ++ S P HPP
Sbjct: 53  LYSGTRSSESLTAQ-AHHRLYPAFSSSCDPVPGNLEQIGSRPLHPP 97


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 402 DTQLIVEGVVPDLLHVI 352
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 549 LRVVPPVSCSTPEMVSPTPYPSTKVTL 629
           LR+ PP S    + +S   +  TK+T+
Sbjct: 364 LRMYPPASILMRKAISDYTFNDTKITI 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,900
Number of Sequences: 438
Number of extensions: 3337
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)