Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_N12
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 160 3e-40
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 101 1e-22
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 99 7e-22
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 80 4e-16
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 77 3e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 75 1e-14
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 74 3e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 73 7e-14
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 72 9e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 69 1e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 67 3e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 62 8e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 62 1e-10
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 60 5e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 58 2e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 57 3e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 56 9e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 55 2e-08
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 54 4e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 53 5e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 49 1e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.003
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.003
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.031
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.22
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 29 0.87
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.5
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.7
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 3.5
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 4.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 6.1
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 8.1
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 160 bits (388), Expect = 3e-40
Identities = 73/120 (60%), Positives = 91/120 (75%)
Frame = +1
Query: 433 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 612
G+ V P+ FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKT
Sbjct: 114 GLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKT 173
Query: 613 LAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAADFGHTSYVRNTCVFXXV 792
L+Y LPAIVHIN QP + GDGPI LVLAPT ELA QIQQ FG +S +RNTCV+ V
Sbjct: 174 LSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGV 233
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +3
Query: 294 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSG 434
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHG 114
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 771 HVCVXXGAPKXXQARDLXRG 830
+ CV G P+ Q RDL RG
Sbjct: 226 NTCVYGGVPRGPQIRDLIRG 245
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 101 bits (243), Expect = 1e-22
Identities = 49/141 (34%), Positives = 80/141 (56%)
Frame = +1
Query: 433 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 612
G++ P+ + + + ++GY++PT IQAQ P SG++++GVA+TGSGKT
Sbjct: 410 GIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKT 469
Query: 613 LAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAADFGHTSYVRNTCVFXXV 792
+A++LP HI +Q P++ G+GPIA+++ PT ELA QI + F +R C +
Sbjct: 470 IAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGA 529
Query: 793 LLKXXKPGTWXGXXKIXIATP 855
+K G +I + TP
Sbjct: 530 PIKDQIADLKRG-AEIVVCTP 549
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 99.1 bits (236), Expect = 7e-22
Identities = 47/102 (46%), Positives = 70/102 (68%), Gaps = 3/102 (2%)
Frame = +1
Query: 433 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 612
G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G+A+TGSGKT
Sbjct: 241 GDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKT 300
Query: 613 LAYILPAIVHINNQPPIRRGD---GPIALVLAPTXELAQQIQ 729
A+I+P I+ I+ PP+ + GP A+VLAPT ELAQQIQ
Sbjct: 301 AAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 80.2 bits (189), Expect = 4e-16
Identities = 40/91 (43%), Positives = 62/91 (68%)
Frame = +1
Query: 451 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 630
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG+A+TGSGKT+A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 631 AIVHINNQPPIRRGDGPIALVLAPTXELAQQ 723
A+ ++N + P LV++PT ELA Q
Sbjct: 223 ALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 77.4 bits (182), Expect = 3e-15
Identities = 48/158 (30%), Positives = 82/158 (51%)
Frame = +1
Query: 382 HHMKSKSIEINTR*L*VGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 561
+++ SK +E N R G + + F+ + + + G+K PTPIQ + P+
Sbjct: 46 NYIASKLLESNRRTK--GKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLL 103
Query: 562 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAA 741
+ G+++VG+A+TGSGKT A+++P I H+ + AL+L+P ELA Q +V
Sbjct: 104 LEGRDVVGMARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVK 160
Query: 742 DFGHTSYVRNTCVFXXVLLKXXKPGTWXGXXKIXIATP 855
DF + +R+ + V L+ + G I +ATP
Sbjct: 161 DFSKGTDLRSVAIVGGVSLE-EQFSLLSGKPDIVVATP 197
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 75.4 bits (177), Expect = 1e-14
Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Frame = +1
Query: 463 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 642
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 643 I-NNQPPIRRGDGPIALVLAPTXELAQQIQQVAADFGHTSYVRNTCV 780
+ NN P A+VLAPT ELA QI + G + VR+ +
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVI 148
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 73.7 bits (173), Expect = 3e-14
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +1
Query: 433 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 612
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 613 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTXELAQQIQQV 735
AY++P + + Q I G AL+L PT ELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 72.5 bits (170), Expect = 7e-14
Identities = 38/94 (40%), Positives = 54/94 (57%)
Frame = +1
Query: 463 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 642
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 643 INNQPPIRRGDGPIALVLAPTXELAQQIQQVAAD 744
+ + G G AL++APT ELA QI V +
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 72.1 bits (169), Expect = 9e-14
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Frame = +1
Query: 451 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 630
P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTGSGKT ++ P
Sbjct: 167 PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFP 226
Query: 631 AI-VHINNQP---PIRRGDG---------PIALVLAPTXELAQQIQQVAADFGHTSYVRN 771
+ + + P P+ + G P L+LAPT EL QI + + F + S+VR
Sbjct: 227 ILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRP 286
Query: 772 TCVF 783
V+
Sbjct: 287 CAVY 290
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 68.5 bits (160), Expect = 1e-12
Identities = 35/92 (38%), Positives = 55/92 (59%)
Frame = +1
Query: 463 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 642
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 643 INNQPPIRRGDGPIALVLAPTXELAQQIQQVA 738
+ +P ++ L+L PT ELA Q VA
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 67.3 bits (157), Expect = 3e-12
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Frame = +1
Query: 454 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 633
I+ F + + +Q+ +K MG++ T IQ + P ++G++++G A+TGSGKTLA+++P
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 634 I--VHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAD 744
I ++ P R G G ++++PT ELA QI VA +
Sbjct: 148 IEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 62.5 bits (145), Expect = 8e-11
Identities = 33/107 (30%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Frame = +1
Query: 454 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 627
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 628 PAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAADFGHTSYVR 768
+ ++ P P A+ LAP+ ELA+QI V + G + V+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 62.1 bits (144), Expect = 1e-10
Identities = 31/96 (32%), Positives = 55/96 (57%)
Frame = +1
Query: 463 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 642
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 643 INNQPPIRRGDGPIALVLAPTXELAQQIQQVAADFG 750
++ + + L+L PT ELA Q QV G
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 59.7 bits (138), Expect = 5e-10
Identities = 35/99 (35%), Positives = 54/99 (54%)
Frame = +1
Query: 454 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 633
+ +F E + +K + T IQ Q P A+ G++++G A+TGSGKTLA+I+P
Sbjct: 38 VDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPL 97
Query: 634 IVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAADFG 750
I ++ + DG ALV++PT ELA Q + G
Sbjct: 98 IENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 57.6 bits (133), Expect = 2e-09
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Frame = +1
Query: 448 NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYIL 627
N + FEE N + + +G+ GY+ P+ +Q++ G++++ AQ+G+GKT + +
Sbjct: 18 NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSI 77
Query: 628 PAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAADFG-HTSYVRNTCV 780
+ I+ +R AL+L+PT ELA QIQ V G H + + C+
Sbjct: 78 GILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNVQCHACI 124
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 57.2 bits (132), Expect = 3e-09
Identities = 35/96 (36%), Positives = 48/96 (50%)
Frame = +1
Query: 463 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 642
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 643 INNQPPIRRGDGPIALVLAPTXELAQQIQQVAADFG 750
+ P G AL+L PT ELA QI + A G
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 55.6 bits (128), Expect = 9e-09
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +1
Query: 514 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 687
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 688 LVLAPTXELAQQIQQ 732
LV+APT ELA QI Q
Sbjct: 196 LVVAPTRELAHQICQ 210
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 54.8 bits (126), Expect = 2e-08
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +1
Query: 445 HNPIQYFEEANFPDYVQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAY 621
+NP+ EE FP+ + + +K E T IQ P S ++L+ A TGSGKT+AY
Sbjct: 43 NNPVDPIEE--FPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAY 100
Query: 622 ILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVA 738
+ P + + P G A+++APT EL +QI + A
Sbjct: 101 LFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 53.6 bits (123), Expect = 4e-08
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = +1
Query: 454 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 633
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 634 IVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAADFGHTSYVR-NTCV 780
+ I+ +++ AL+LAPT ELAQQIQ+V G V + C+
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACI 122
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 53.2 bits (122), Expect = 5e-08
Identities = 34/80 (42%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = +1
Query: 511 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPP--IRRGDG 678
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 679 PIALVLAPTXELAQQIQQVA 738
A+++APT EL QQI VA
Sbjct: 217 IYAVIMAPTRELCQQIYNVA 236
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 48.8 bits (111), Expect = 1e-06
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Frame = +1
Query: 451 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSGKTLAYIL 627
P + E A+ + + G+++ TP+Q + + + +N V A+TG+GKTLA++L
Sbjct: 36 PTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLL 95
Query: 628 PAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAADFGHTSYVRNTCVFXXVLLKXX 807
A + P +++L+PT ELA QI + A + + +R +
Sbjct: 96 VAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMRE 155
Query: 808 KPGTWXGXXKIXIATP 855
+ G + IATP
Sbjct: 156 ENAIRRGNANLLIATP 171
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 574 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQI 726
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 574 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQI 726
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.031
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +1
Query: 553 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTXELAQQI 726
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PT EL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.1 bits (67), Expect = 0.22
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +1
Query: 562 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQ 720
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 32 LKLCFFHRAAVVKVDPASEXIHSLNKHLQLNPKNNHV 142
LKLC + R ++ DP S + HL L+ KN+ V
Sbjct: 261 LKLCLYRR--IIGFDPPSWKTQQMMSHLNLSRKNSEV 295
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 314 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 141
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 140 HDYFSDLVEDVYLNYGXFLTQG 75
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 511 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 651
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 477 ICFFKVLNRIMNLNAHLQLPRVYFYTLRLHMVI 379
I F VL+ + +N L L ++YFY R MVI
Sbjct: 85 ILLFGVLSTPITVNLGLTLFKLYFYNKRYDMVI 117
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 499 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 675
GV +GY + P G P+ ++GK + V GK +L + + + P ++RGD
Sbjct: 279 GVVAIGYGDGFPQVRNGCPVIINGKRVPTV-----GKVCMDML--AIDVTDVPDVKRGD 330
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 384 PYEVEEYRNKHEVTVS 431
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 359 WIIKVFVERLE*NRIPIWASHVLPSREF 276
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,771
Number of Sequences: 5004
Number of extensions: 69629
Number of successful extensions: 213
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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