Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_N11
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical
           protein F11D11.8 protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
 Frame = +2

Query: 86  WLHRLYYFLVFLVSFGTLNAASQCGEIPITEWSGTESRRKQPLKSPIDLVVIQHTVSNDC 265
           +L   +YF VFL+ F + +         +TE   TE +    +K  ID          +C
Sbjct: 3   FLSSFFYFSVFLLPFTSCDVKMIKIFGKVTET--TEPQAFDAVKDCID----------EC 50

Query: 266 FTDEECLLS-VNSLRQHHMR-------LAGFKDLGYSFVAGGNGKIYE----GAGWNH 403
           F D ECLL+  NS   H+          A +KD+ YS V   +G IY      AGW++
Sbjct: 51  FEDSECLLAFFNSACFHYYTELPDATCPASYKDIKYS-VTSDSGDIYSWKKTDAGWSY 107


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 666  PSTFRALSSQWGQLSISDCSTAPGLSVFINC 574
            P  F+ +S Q   + ISDCST   L+ FI C
Sbjct: 1489 PYPFKEMSQQ---IDISDCSTHYSLTTFITC 1516


>AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical
           protein Y24F12A.1 protein.
          Length = 437

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 106 FFGVLGEFRNPECSVPMRRNSHHRMEW 186
           FFG++  F  P+  V ++ NS + +EW
Sbjct: 181 FFGLIANFIKPDLFVDVKGNSSYDVEW 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,016,198
Number of Sequences: 27780
Number of extensions: 387095
Number of successful extensions: 942
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)